Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7140

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7139: 15507 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 969483 to 971578 15507 mRNA_7140: 15508 - KOG1029 Endocytic adaptor protein intersectin, at 971914 to 976417 15508 mRNA_7141: 15509 - BLAST AP-4 complex subunit epsilon [Leucoagaricus sp. SymC...., at 976528 to 979510 15509

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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971,029 - 15507 mRNA_7139 0.74 -0.5
971,125 - 15507 mRNA_7139 0.78 -0.6
971,131 - 15507 mRNA_7139 0.79 0.9
971,269 + 15507 mRNA_7139 0.85 -0.5
971,288 - 15507 mRNA_7139 0.86 2.3
971,397 - 0.1
971,405 + -0.8
971,434 + 2.8
971,440 + 1.4
971,492 + -1.2
971,741 + 0.5
971,748 + -0.1
971,992 + 2.0
972,013 - 0.9
972,166 + -0.2
972,189 + 1.0
972,515 - 15508 mRNA_7140 0.13 0.9
972,596 - 15508 mRNA_7140 0.15 -0.0
972,705 + 15508 mRNA_7140 0.18 1.5
972,742 + 15508 mRNA_7140 0.18 0.9
972,890 - 15508 mRNA_7140 0.22 -0.1
973,053 - 15508 mRNA_7140 0.25 -0.0
973,436 + 15508 mRNA_7140 0.34 -0.9
973,802 - 15508 mRNA_7140 0.42 -1.2
973,805 + 15508 mRNA_7140 0.42 0.9
973,937 + 15508 mRNA_7140 0.45 0.4
974,668 - 15508 mRNA_7140 0.61 -1.2
974,721 - 15508 mRNA_7140 0.62 1.5
974,730 - 15508 mRNA_7140 0.63 -0.8
974,778 - 15508 mRNA_7140 0.64 -0.1
975,118 + 15508 mRNA_7140 0.71 -0.1
975,194 - 15508 mRNA_7140 0.73 0.1
975,339 - 15508 mRNA_7140 0.76 0.3
975,755 + 15508 mRNA_7140 0.85 0.2
976,065 - 0.7
976,209 - -0.2
976,314 - 0.8
976,380 + 1.2
976,501 - 0.0
976,519 + 0.2
976,519 + -0.9
976,635 - 0.3
976,636 - -0.0
976,824 + -0.1
976,933 - 15509 mRNA_7141 0.14 -0.5
976,944 - 15509 mRNA_7141 0.14 0.9
976,952 + 15509 mRNA_7141 0.14 -0.7
976,953 + 15509 mRNA_7141 0.14 0.4
976,967 - 15509 mRNA_7141 0.15 1.0