Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7116

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7115: 15483 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 915636 to 918075 15483 mRNA_7116: 15484 - K04393 CDC42 cell division control protein 42, at 918589 to 919535 15484 mRNA_7117: 15485 - K12868 SYF2 pre-mRNA-splicing factor SYF2, at 920299 to 921602 15485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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917,602 + 15483 mRNA_7115 0.81 -1.9
917,728 + 15483 mRNA_7115 0.86 -2.0
917,863 - -1.0
917,880 + -4.4
917,999 - -4.0
918,120 - 1.8
918,144 + -0.1
918,147 - -0.3
918,153 - -0.6
918,153 + -1.7
918,153 + -0.0
918,166 - 0.2
918,186 - -0.1
918,192 + -0.2
918,305 - 4.5
918,445 + -1.1
918,736 + 15484 mRNA_7116 0.16 0.9
918,863 - 15484 mRNA_7116 0.29 1.1
919,302 + 15484 mRNA_7116 0.75 0.9
919,304 + 15484 mRNA_7116 0.76 -0.9
919,337 + 15484 mRNA_7116 0.79 0.9
919,451 + 0.4
919,487 - 0.8
919,496 + 1.7
919,515 - -2.0
919,588 + 0.7
919,598 - 1.9
919,623 + 1.8
919,624 + 0.9
919,636 + 0.3
919,790 - 0.3
919,791 + 0.8
919,794 + 1.1
919,800 + 2.1
919,937 - 0.4
919,942 - 0.2
920,082 - -0.5
920,083 + -4.0
920,107 + -0.6
920,108 + 0.5
920,112 - -0.0
920,237 + -0.2
920,238 + 2.7
920,251 + -0.4
920,255 + -0.4