Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7069

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7068: 15436 - K00167 BCKDHB, bkdA2 2-oxoisovalerate dehydrogenase E1 component beta subunit, at 804244 to 806337 15436 mRNA_7069: 15437 - HMMPfam-DNA-directed RNA polymerase III subunit Rpc31-PF11705, at 806497 to 812015 15437 mRNA_7070: 15438 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 812673 to 814209 15438

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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805,533 - 15436 mRNA_7068 0.62 0.3
805,636 + 15436 mRNA_7068 0.66 0.6
805,952 - 15436 mRNA_7068 0.82 0.1
806,083 - 15436 mRNA_7068 0.88 -1.9
806,100 + 15436 mRNA_7068 0.89 0.4
806,227 - -0.2
806,526 + 1.0
806,680 - -0.2
806,892 - -1.3
806,996 - -0.6
807,111 - 15437 mRNA_7069 0.11 0.9
807,155 - 15437 mRNA_7069 0.12 0.8
807,402 + 15437 mRNA_7069 0.16 -1.4
807,600 - 15437 mRNA_7069 0.20 0.0
807,601 + 15437 mRNA_7069 0.20 0.2
807,601 + 15437 mRNA_7069 0.20 0.9
807,610 + 15437 mRNA_7069 0.20 -0.6
807,879 - 15437 mRNA_7069 0.25 -0.4
808,173 + 15437 mRNA_7069 0.30 1.3
808,530 + 15437 mRNA_7069 0.37 -0.2
808,533 - 15437 mRNA_7069 0.37 0.0
808,540 + 15437 mRNA_7069 0.37 -0.3
808,579 + 15437 mRNA_7069 0.38 0.1
808,674 + 15437 mRNA_7069 0.39 0.3
808,741 + 15437 mRNA_7069 0.41 -1.4
808,858 + 15437 mRNA_7069 0.43 0.5
808,990 - 15437 mRNA_7069 0.45 0.4
809,186 - 15437 mRNA_7069 0.49 -1.1
809,361 - 15437 mRNA_7069 0.52 -0.0
809,747 - 15437 mRNA_7069 0.59 1.5
809,789 + 15437 mRNA_7069 0.60 0.7
809,796 - 15437 mRNA_7069 0.60 3.0
809,892 - 15437 mRNA_7069 0.62 -0.8
810,092 - 15437 mRNA_7069 0.65 -1.1
810,389 + 15437 mRNA_7069 0.71 0.4
810,502 + 15437 mRNA_7069 0.73 -1.9
810,639 + 15437 mRNA_7069 0.75 -1.2
810,650 - 15437 mRNA_7069 0.75 0.2
810,665 + 15437 mRNA_7069 0.76 -1.6
810,668 + 15437 mRNA_7069 0.76 0.0
810,766 - 15437 mRNA_7069 0.77 -0.7
810,769 + 15437 mRNA_7069 0.77 -1.2
810,777 + 15437 mRNA_7069 0.78 -0.6
810,787 - 15437 mRNA_7069 0.78 -0.1
810,790 + 15437 mRNA_7069 0.78 -0.1
810,804 - 15437 mRNA_7069 0.78 -1.3
810,808 - 15437 mRNA_7069 0.78 0.4
810,808 + 15437 mRNA_7069 0.78 -0.8
811,993 + 0.3
812,128 - 1.2
812,131 + 1.6
812,141 - -2.7
812,150 + -0.4
812,192 - 1.4
812,226 - -0.7
812,226 - -0.8
812,248 + 1.7
812,253 + 1.1
812,254 + 0.7
812,258 - 0.2
812,261 + -1.2
812,281 + -0.4
812,286 - -1.0
812,294 - 0.3
812,318 - 0.4
812,323 - -0.2
812,324 + -0.3
812,339 - -0.5
812,377 - -0.0
812,402 + -0.5
812,405 - 1.5
812,406 - 1.2
812,415 + 1.5
812,416 - 0.1
812,416 + -0.3
812,424 - 0.7
812,424 + 1.7
812,426 - -0.7
812,449 - 0.1
812,463 - -0.6
812,466 + -0.4
812,469 + -0.3
812,485 - 0.5
812,489 + 0.2
812,490 + 0.3
812,608 - 0.4
812,612 - 0.5
812,628 + 0.4
812,779 + -0.8