Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7068

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7067: 15435 - K13507 GAT glycerol-3-phosphate O-acyltransferase / dihydroxyacetone phosphate acyltransferase, at 800533 to 803766 15435 mRNA_7068: 15436 - K00167 BCKDHB, bkdA2 2-oxoisovalerate dehydrogenase E1 component beta subunit, at 804244 to 806337 15436 mRNA_7069: 15437 - HMMPfam-DNA-directed RNA polymerase III subunit Rpc31-PF11705, at 806497 to 812015 15437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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803,567 + 0.3
803,570 + 0.4
803,584 - 0.5
803,709 - 0.4
803,722 - 0.7
803,728 - 1.6
803,756 - 1.5
803,847 - -1.0
803,869 - -0.2
803,875 - 1.1
803,877 - 0.4
803,877 - 1.3
803,885 + -0.1
803,887 - -1.7
803,894 + 1.1
803,896 + -1.4
803,914 + -0.5
803,970 - -0.8
803,971 - -1.4
804,015 - -0.7
804,028 - -1.0
804,031 - -1.2
804,110 + 1.1
804,125 + 2.0
804,142 + -0.6
804,144 + 1.4
804,144 + 0.4
804,144 + -0.6
804,147 - -0.8
804,156 - 0.3
804,165 - -0.1
804,175 - 0.9
804,180 + 0.4
804,184 + 1.1
804,338 - -0.5
804,354 + 0.2
804,371 - -2.4
804,453 + 0.9
804,466 + 15436 mRNA_7068 0.11 -0.4
804,487 - 15436 mRNA_7068 0.12 1.0
804,504 + 15436 mRNA_7068 0.12 -0.8
804,632 - 15436 mRNA_7068 0.19 0.8
805,206 + 15436 mRNA_7068 0.46 -0.4
805,254 + 15436 mRNA_7068 0.48 -1.2
805,533 - 15436 mRNA_7068 0.62 0.3
805,636 + 15436 mRNA_7068 0.66 0.6
805,952 - 15436 mRNA_7068 0.82 0.1
806,083 - 15436 mRNA_7068 0.88 -1.9
806,100 + 15436 mRNA_7068 0.89 0.4
806,227 - -0.2
806,526 + 1.0
806,680 - -0.2
806,892 - -1.3
806,996 - -0.6
807,111 - 15437 mRNA_7069 0.11 0.9
807,155 - 15437 mRNA_7069 0.12 0.8