Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7050

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7049: 15417 - KOG0565 Inositol polyphosphate 5-phosphatase and related proteins, at 758628 to 760981 15417 mRNA_7050: 15418 - K08678 UXS1, uxs UDP-glucuronate decarboxylase, at 761052 to 762821 15418 mRNA_7051: 15419 - HMMPfam-Translation initiation factor eIF3 subunit-PF08597, at 763063 to 764121 15419

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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760,288 + 15417 mRNA_7049 0.71 1.0
760,346 + 15417 mRNA_7049 0.73 0.1
760,476 + 15417 mRNA_7049 0.79 0.4
760,498 - 15417 mRNA_7049 0.79 -0.1
760,615 - 15417 mRNA_7049 0.84 2.1
760,766 + -0.1
760,777 - -0.1
760,803 - 0.7
761,075 - -2.6
761,688 + 15418 mRNA_7050 0.36 3.2
761,841 + 15418 mRNA_7050 0.45 0.0
761,924 + 15418 mRNA_7050 0.49 -1.4
762,107 - 15418 mRNA_7050 0.60 1.6
762,117 + 15418 mRNA_7050 0.60 0.3
762,237 - 15418 mRNA_7050 0.67 -0.2
762,379 + 15418 mRNA_7050 0.75 0.6
762,408 - 15418 mRNA_7050 0.77 -0.9
762,411 + 15418 mRNA_7050 0.77 -2.4
762,527 - 15418 mRNA_7050 0.83 -0.1
762,540 - 15418 mRNA_7050 0.84 -2.0
762,557 + 15418 mRNA_7050 0.85 -1.2
762,673 - -0.7
762,820 - -2.0
762,833 - -0.0
762,967 - -0.7
762,976 - -0.1
762,988 - 1.8