Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7006

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7005: 15373 - SUPERFAMILY--SSF81383, at 653075 to 653981 15373 mRNA_7006: 15374 - K17974 JSN1, PUF1 protein JSN1, at 654250 to 659147 15374 mRNA_7007: 15375 - BLAST mitochondrial complex I protein Fmp36 [Aschersonia al..., at 659889 to 660691 15375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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653,269 - 15373 mRNA_7005 0.21 1.3
653,270 - 15373 mRNA_7005 0.21 -2.7
653,274 - 15373 mRNA_7005 0.22 0.1
653,278 + 15373 mRNA_7005 0.22 0.6
653,286 + 15373 mRNA_7005 0.23 -1.3
653,288 - 15373 mRNA_7005 0.23 -0.7
653,294 + 15373 mRNA_7005 0.24 -0.1
653,410 - 15373 mRNA_7005 0.37 0.4
653,864 - 15373 mRNA_7005 0.87 -0.2
653,977 + -0.8
654,148 - -2.5
654,166 - -1.3
654,255 - -1.2
654,322 + 0.0
654,410 + 0.3
654,598 - -0.5
654,598 + -1.6
655,126 + 15374 mRNA_7006 0.18 -1.3
655,269 - 15374 mRNA_7006 0.21 -0.2
655,607 + 15374 mRNA_7006 0.28 1.3
655,856 - 15374 mRNA_7006 0.33 1.5
655,922 - 15374 mRNA_7006 0.34 -1.8
655,961 + 15374 mRNA_7006 0.35 -2.4
656,048 - 15374 mRNA_7006 0.37 -0.6
656,093 - 15374 mRNA_7006 0.38 0.3
656,356 - 15374 mRNA_7006 0.43 -0.7
656,467 - 15374 mRNA_7006 0.45 -4.0
656,512 + 15374 mRNA_7006 0.46 -1.0
657,068 - 15374 mRNA_7006 0.58 -1.2
657,176 - 15374 mRNA_7006 0.60 0.5
657,421 + 15374 mRNA_7006 0.65 -0.2
657,565 - 15374 mRNA_7006 0.68 -1.8
657,573 - 15374 mRNA_7006 0.68 0.3
657,864 + 15374 mRNA_7006 0.74 2.6
657,885 - 15374 mRNA_7006 0.74 -0.5
658,051 + 15374 mRNA_7006 0.78 1.3
658,061 - 15374 mRNA_7006 0.78 -0.2
658,194 - 15374 mRNA_7006 0.81 -1.0
658,194 + 15374 mRNA_7006 0.81 1.5
658,195 + 15374 mRNA_7006 0.81 -1.7
658,400 - 15374 mRNA_7006 0.85 -0.5
658,463 - 15374 mRNA_7006 0.86 -2.0
658,690 - -0.8
658,773 - 0.3
658,925 - -0.3
658,937 - -1.5
658,939 + -0.4
659,067 - 0.8
659,079 + 0.2
659,234 + -3.0
659,235 - -1.3
659,374 - -2.5
659,388 - 1.9
659,493 + 0.6
659,506 - 0.6
659,519 - 0.5
659,534 + -0.8
659,539 - 1.6
659,540 + 0.6
659,548 + 2.0
659,564 - 2.7
659,579 - -1.1
659,579 - -0.8
659,584 + -1.8
659,709 - -0.3
659,736 - 1.7
659,841 + 2.0
659,857 + 0.3
660,001 - 15375 mRNA_7007 0.14 -1.5
660,132 + 15375 mRNA_7007 0.30 0.9