Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6990

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611825 to 615054 15357 mRNA_6990: 15358 - K09001 anmK anhydro-N-acetylmuramic acid kinase, at 615563 to 617347 15358 mRNA_6991: 15359 - KOG0254 Predicted transporter (major facilitator superfamily), at 617991 to 620077 15359

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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614,997 + 2.2
615,102 + -1.1
615,445 - 2.0
615,562 - 1.4
615,655 + -0.1
615,807 - 15358 mRNA_6990 0.14 -1.6
615,961 - 15358 mRNA_6990 0.22 0.6
615,975 + 15358 mRNA_6990 0.23 2.1
616,151 - 15358 mRNA_6990 0.33 -0.9
616,549 + 15358 mRNA_6990 0.55 -2.5
616,666 + 15358 mRNA_6990 0.62 0.6
617,141 + 15358 mRNA_6990 0.88 0.6
617,427 + 2.1
617,499 + -2.1
617,501 - 0.4
617,516 - 0.5
617,536 - 0.1
617,542 + -0.7
617,560 - -1.2
617,567 - 0.9
617,570 - -2.7
617,575 + 0.4
617,576 - -1.1
617,577 - -0.4
617,581 - -2.6
617,582 + 0.7
617,583 + -0.6
617,584 + 0.2
617,590 - -1.0
617,595 + 0.8
617,603 - -0.2
617,610 - 0.6
617,676 - -1.6
617,689 - 0.2
617,694 + -1.6
617,853 - -1.8
618,121 + -0.2
618,140 - -0.4
618,156 - -1.0
618,169 + -1.2
618,309 - 15359 mRNA_6991 0.15 -0.7
618,313 + 15359 mRNA_6991 0.15 0.4