Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6985

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6984: 15352 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 599695 to 602665 15352 mRNA_6985: 15353 - BLAST chitin deacetylase [Moniliophthora roreri MCA 2997], at 602865 to 604394 15353 mRNA_6986: 15354 - K12872 RBM22, SLT11 pre-mRNA-splicing factor RBM22/SLT11, at 604534 to 605830 15354

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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601,963 + 15352 mRNA_6984 0.76 0.8
601,968 - 15352 mRNA_6984 0.77 1.4
602,072 - 15352 mRNA_6984 0.80 -0.5
602,394 - -2.4
602,499 - -0.1
602,531 - 0.3
602,673 - 0.3
602,674 - 1.9
602,680 + -0.1
602,694 - -0.7
602,694 - 0.3
602,715 - -2.2
602,715 - 1.4
602,716 + 0.5
602,717 - -0.7
602,733 + 0.5
602,750 - -0.1
602,801 - -0.0
602,828 - -0.8
602,857 + -0.1
603,083 + 15353 mRNA_6985 0.14 1.3
603,264 - 15353 mRNA_6985 0.26 -2.2
603,271 - 15353 mRNA_6985 0.27 0.2
603,374 + 15353 mRNA_6985 0.33 1.2
603,421 + 15353 mRNA_6985 0.36 0.5
603,424 + 15353 mRNA_6985 0.37 -0.8
603,588 - 15353 mRNA_6985 0.47 1.7
603,591 - 15353 mRNA_6985 0.47 0.2
603,668 - 15353 mRNA_6985 0.52 0.1
603,677 - 15353 mRNA_6985 0.53 -0.4
603,699 - 15353 mRNA_6985 0.55 -0.5
603,974 - 15353 mRNA_6985 0.72 -1.3
603,992 - 15353 mRNA_6985 0.74 -2.0
604,129 - 15353 mRNA_6985 0.83 -0.7
604,295 - 0.0
604,300 - 1.3
604,300 - -0.7
604,449 - -0.1
604,454 - 2.8
604,455 + 0.3
604,484 + 1.5
604,589 - -2.6