Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6977

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6976: 15344 - K14002 SCJ1 DnaJ-related protein SCJ1, at 582618 to 583763 15344 mRNA_6977: 15345 - K09515 DNAJB9 DnaJ homolog subfamily B member 9, at 583790 to 584346 15345 mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584489 to 585687 15346

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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582,932 + 15344 mRNA_6976 0.27 1.5
582,952 + 15344 mRNA_6976 0.29 1.5
583,366 + 15344 mRNA_6976 0.65 -0.3
583,375 + 15344 mRNA_6976 0.66 0.3
583,496 + 15344 mRNA_6976 0.77 1.0
584,005 + 15345 mRNA_6977 0.39 -0.2
584,135 - 15345 mRNA_6977 0.62 0.4
584,245 + 15345 mRNA_6977 0.82 0.5
584,388 - -0.4
584,391 - -0.1
584,392 - 1.5
584,395 - -0.0
584,399 - -2.8
584,401 - -0.2
584,406 - -0.1
584,407 + 0.2
584,411 - -0.1
584,431 + -0.0
584,441 - 1.5
584,447 - -1.1
584,448 + 0.5
584,696 - 15346 mRNA_6978 0.17 -0.4
584,721 + 15346 mRNA_6978 0.19 -1.2
584,724 - 15346 mRNA_6978 0.20 0.7
584,756 - 15346 mRNA_6978 0.22 -1.2
584,858 - 15346 mRNA_6978 0.31 2.7
584,896 + 15346 mRNA_6978 0.34 0.6
585,158 + 15346 mRNA_6978 0.56 -1.0
585,163 + 15346 mRNA_6978 0.56 -0.1