Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6972

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6971: 15339 - K03671 trxA thioredoxin 1, at 567242 to 568041 15339 mRNA_6972: 15340 - K20279 SYNJ synaptojanin, at 568176 to 572419 15340 mRNA_6973: 15341 - K11303 HAT1, KAT1 histone acetyltransferase 1, at 572592 to 574305 15341

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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567,224 - -0.8
567,226 - 0.0
567,236 - 1.8
567,236 - -0.6
567,385 + 15339 mRNA_6971 0.18 0.6
567,501 - 15339 mRNA_6971 0.32 -1.8
567,949 + 15339 mRNA_6971 0.88 -0.1
567,952 + 15339 mRNA_6971 0.89 0.1
568,079 - 0.7
568,090 + -0.9
568,104 + 0.2
568,106 - 1.5
568,222 - -0.4
568,232 - 1.8
568,242 + 0.6
568,381 + 1.1
568,533 + -1.6
568,996 + 15340 mRNA_6972 0.19 -1.0
569,274 - 15340 mRNA_6972 0.26 0.8
569,592 + 15340 mRNA_6972 0.33 -1.4
569,881 - 15340 mRNA_6972 0.40 -3.2
570,001 - 15340 mRNA_6972 0.43 0.1
570,850 + 15340 mRNA_6972 0.63 -0.0
570,880 - 15340 mRNA_6972 0.64 -1.0
571,171 - 15340 mRNA_6972 0.71 -0.1
571,192 + 15340 mRNA_6972 0.71 -3.2
571,461 + 15340 mRNA_6972 0.77 0.5
571,502 - 15340 mRNA_6972 0.78 1.6
571,753 - 15340 mRNA_6972 0.84 0.5
571,950 - 15340 mRNA_6972 0.89 1.3
572,365 - -0.9
572,516 - -1.6
572,645 - -1.2
572,672 + -0.4
572,678 + -1.1
572,791 + 15341 mRNA_6973 0.12 -0.5