Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6967

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6966: 15334 - K02210 MCM7, CDC47 DNA replication licensing factor MCM7, at 555370 to 558100 15334 mRNA_6967: 15335 - K19995 SCAMP secretory carrier-associated membrane protein, at 558352 to 560106 15335 mRNA_6968: 15336 - K00737 MGAT3 beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, at 560422 to 561850 15336

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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558,137 - 0.7
558,509 + 0.5
559,097 - 15335 mRNA_6967 0.42 2.0
559,264 - 15335 mRNA_6967 0.52 -0.1
559,445 + 15335 mRNA_6967 0.62 -1.0
559,715 + 15335 mRNA_6967 0.78 0.7
559,982 - -0.6
560,137 + -1.0
560,142 - -0.9
560,164 + -0.2
560,224 + -0.9
560,225 + -0.2
560,226 - -1.3
560,226 - 0.2
560,227 - -0.8
560,231 + 1.3
560,233 + -1.7
560,233 + 0.1
560,234 + 0.9
560,238 - -0.1
560,238 - -0.1
560,242 + -0.1
560,244 - -0.1
560,249 + 0.1
560,262 - 0.3
560,277 - 0.8
560,304 + 1.4
560,313 + -0.7
560,316 - 0.2
560,321 - 0.1
560,321 + 1.1
560,324 + 0.4
560,330 + -0.0
560,331 - -2.4
560,333 + -1.0
560,345 - 0.7
560,346 - -0.0
560,369 + 2.0
560,371 + -0.3
560,455 + -1.8
560,476 + -1.2
560,478 - 0.6
560,486 + 1.6
560,489 - -0.6
560,501 + -0.2
560,616 - 15336 mRNA_6968 0.14 -2.3
560,629 + 15336 mRNA_6968 0.14 0.5
560,758 - 15336 mRNA_6968 0.24 -0.6
561,034 + 15336 mRNA_6968 0.43 -1.1
561,068 + 15336 mRNA_6968 0.45 1.2