Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6952

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6951: 15319 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 510991 to 511843 15319 mRNA_6952: 15320 - K11858 USP48 ubiquitin carboxyl-terminal hydrolase 48, at 512124 to 517290 15320 mRNA_6953: 15321 - K13719 OTU1, YOD1 ubiquitin thioesterase OTU1, at 517419 to 518782 15321

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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511,382 + 15319 mRNA_6951 0.46 1.5
511,393 + 15319 mRNA_6951 0.47 0.8
512,292 - -1.2
512,302 + -0.3
512,844 + 15320 mRNA_6952 0.14 0.8
512,993 - 15320 mRNA_6952 0.17 0.5
513,136 - 15320 mRNA_6952 0.20 -0.1
513,621 - 15320 mRNA_6952 0.29 1.0
514,193 + 15320 mRNA_6952 0.40 -0.1
514,601 - 15320 mRNA_6952 0.48 -0.2
514,928 + 15320 mRNA_6952 0.54 -1.8
515,166 + 15320 mRNA_6952 0.59 2.3
515,206 + 15320 mRNA_6952 0.60 -1.4
515,770 + 15320 mRNA_6952 0.71 -0.1
516,203 - 15320 mRNA_6952 0.79 -0.5
516,762 + 15320 mRNA_6952 0.90 -0.2
516,765 + 15320 mRNA_6952 0.90 -0.1
516,769 + 15320 mRNA_6952 0.90 0.0
516,906 + -1.3
517,043 - 1.5
517,054 - 1.2
517,182 - 0.4
517,216 - -0.7
517,302 - 1.9
517,321 - -1.5
517,502 + -0.7
517,690 - 15321 mRNA_6953 0.20 -1.9
517,965 + 15321 mRNA_6953 0.40 -0.3
517,995 + 15321 mRNA_6953 0.42 -0.3