Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6908

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6907: 15275 - K14016 UFD1 ubiquitin fusion degradation protein 1, at 403238 to 404908 15275 mRNA_6908: 15276 - K01907 AACS, acsA acetoacetyl-CoA synthetase, at 405479 to 408297 15276 mRNA_6909: 15277 - K14315 NDC1, TMEM48 nucleoporin NDC1, at 408529 to 411391 15277

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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405,288 + -0.2
405,310 + 0.1
405,310 - 1.4
405,319 + 0.3
405,327 - -1.0
405,341 + -1.5
405,355 - 2.1
405,448 - -1.0
405,452 - 1.3
405,486 - -2.7
405,494 + -0.2
405,738 - -0.5
405,739 + 0.9
406,063 - 15276 mRNA_6908 0.21 -0.7
406,328 + 15276 mRNA_6908 0.30 1.9
406,418 - 15276 mRNA_6908 0.33 1.4
406,439 - 15276 mRNA_6908 0.34 1.1
406,765 - 15276 mRNA_6908 0.46 -0.2
406,795 + 15276 mRNA_6908 0.47 -2.8
406,911 - 15276 mRNA_6908 0.51 2.0
407,038 - 15276 mRNA_6908 0.55 -1.2
407,058 + 15276 mRNA_6908 0.56 -0.2
407,104 - 15276 mRNA_6908 0.58 -0.8
407,329 - 15276 mRNA_6908 0.66 1.1
407,372 - 15276 mRNA_6908 0.67 -0.1
407,506 - 15276 mRNA_6908 0.72 -0.2
407,514 - 15276 mRNA_6908 0.72 -0.3
407,652 + 15276 mRNA_6908 0.77 -1.1
407,803 + 15276 mRNA_6908 0.82 -0.3
408,090 + 0.2
408,206 + 0.7
408,207 - -1.5
408,217 - -2.0
408,223 + -1.0
408,361 - -1.0
408,365 - 1.0
408,366 - 0.1
408,377 - -1.1
408,412 + 1.3
408,413 - -1.1
408,417 - 0.5
408,420 + 2.4
408,420 - 2.5
408,420 - 1.0
408,421 + 1.9
408,455 - -2.5
408,468 + -0.9
408,484 + 1.7
408,489 - 0.4
408,509 - -1.9
408,835 - 15277 mRNA_6909 0.11 -1.7