Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6876

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6875: 15243 - K10563 mutM, fpg formamidopyrimidine-DNA glycosylase, at 329876 to 331485 15243 mRNA_6876: 15244 - Hypothetical Protein, at 331964 to 333369 15244 mRNA_6877: 15245 - KOG3912 Predicted integral membrane protein, at 333940 to 335664 15245

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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331,264 - 15243 mRNA_6875 0.86 1.7
331,281 + 15243 mRNA_6875 0.87 0.0
331,410 + -1.0
331,415 - 0.7
331,554 - 0.2
331,689 - 0.7
331,705 - -0.6
331,846 + -0.5
331,863 - -0.1
331,877 - -1.2
332,736 + 15244 mRNA_6876 0.55 -0.9
332,765 + 15244 mRNA_6876 0.57 -1.2
332,909 + 15244 mRNA_6876 0.67 -4.2
332,911 + 15244 mRNA_6876 0.67 -1.4
333,028 + 15244 mRNA_6876 0.76 1.3
333,051 + 15244 mRNA_6876 0.77 0.2
333,326 - 0.4
333,326 + -0.9
333,456 - 0.8
333,470 - -1.7
333,530 - 0.3
333,626 + -0.7
333,627 - -0.4
333,639 + -2.1
333,646 - 0.7
333,648 + 2.2
333,650 + -1.1
333,660 + -1.3
333,791 - -0.2
333,961 + 1.1
334,080 - 0.1
334,095 - -0.1
334,188 - 15245 mRNA_6877 0.14 2.6
334,196 - 15245 mRNA_6877 0.15 -1.1
334,200 + 15245 mRNA_6877 0.15 0.1
334,332 - 15245 mRNA_6877 0.23 -0.7