Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6870

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6869: 15237 - K06125 COQ2 4-hydroxybenzoate polyprenyltransferase, at 314323 to 315416 15237 mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315464 to 319765 15238 mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319945 to 325501 15239

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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315,468 - -1.9
315,627 + -0.2
315,750 + -0.2
315,810 + 0.1
315,919 + 15238 mRNA_6870 0.11 0.3
316,067 - 15238 mRNA_6870 0.14 1.0
316,253 + 15238 mRNA_6870 0.18 -3.4
316,473 + 15238 mRNA_6870 0.23 -1.4
316,476 + 15238 mRNA_6870 0.24 0.4
316,590 + 15238 mRNA_6870 0.26 1.3
316,630 + 15238 mRNA_6870 0.27 -0.5
316,712 + 15238 mRNA_6870 0.29 0.0
316,903 + 15238 mRNA_6870 0.33 0.9
316,990 + 15238 mRNA_6870 0.35 -0.6
317,046 - 15238 mRNA_6870 0.37 -0.1
317,145 - 15238 mRNA_6870 0.39 -0.9
317,151 + 15238 mRNA_6870 0.39 1.6
317,184 - 15238 mRNA_6870 0.40 3.1
317,214 - 15238 mRNA_6870 0.41 -2.0
317,313 + 15238 mRNA_6870 0.43 -0.0
317,709 + 15238 mRNA_6870 0.52 0.2
317,997 - 15238 mRNA_6870 0.59 -1.1
318,359 + 15238 mRNA_6870 0.67 0.9
318,763 - 15238 mRNA_6870 0.77 -1.3
318,767 + 15238 mRNA_6870 0.77 -0.2
318,906 + 15238 mRNA_6870 0.80 -1.9
319,062 - 15238 mRNA_6870 0.84 -2.1
319,068 + 15238 mRNA_6870 0.84 0.7
319,527 - -0.3
319,665 - -0.7
319,807 - -0.1
319,809 - -0.6
320,246 + -0.4