Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6860

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6859: 15227 - K16794 PAFAH1B1, LIS1 platelet-activating factor acetylhydrolase IB subunit alpha, at 297202 to 298993 15227 mRNA_6860: 15228 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 299588 to 301362 15228 mRNA_6861: 15229 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 301646 to 303773 15229

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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299,073 + -0.9
299,190 - 1.3
299,389 - 1.2
299,395 - -0.2
299,395 + 1.2
299,458 + -1.3
299,516 - 1.8
299,629 - 0.9
299,642 + -1.6
299,657 - -1.9
299,657 - 0.3
299,660 - -1.0
299,661 + -0.8
299,665 + 0.3
299,667 + 1.3
299,667 + -2.3
299,674 - -0.6
299,674 - -3.2
299,675 + -0.6
299,687 + -0.8
299,691 + 1.4
299,697 - -0.3
299,714 + -0.9
299,985 - 15228 mRNA_6860 0.22 -1.5
300,114 - 15228 mRNA_6860 0.30 0.7
300,124 + 15228 mRNA_6860 0.30 -1.6
300,178 + 15228 mRNA_6860 0.33 -0.4
300,556 + 15228 mRNA_6860 0.55 0.1
300,988 - 15228 mRNA_6860 0.79 0.8
301,033 - 15228 mRNA_6860 0.81 -0.6
301,269 + -0.0
301,297 + -1.6
301,412 + -3.0
301,422 + -1.6
301,428 - -1.0
301,545 - 1.6
301,547 + -1.1
301,556 + 1.5
301,569 - -1.2
301,570 - 1.5
301,571 - 0.1
301,583 - 0.5
301,716 + 0.0
301,719 + -1.0
301,862 + 15229 mRNA_6861 0.10 0.4
302,042 + 15229 mRNA_6861 0.19 -0.1
302,157 + 15229 mRNA_6861 0.24 -1.0