Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6844

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6843: 15211 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 252039 to 252813 15211 mRNA_6844: 15212 - K12183 TSG101, STP22, VPS23 ESCRT-I complex subunit TSG101, at 253096 to 258115 15212 mRNA_6845: 15213 - Hypothetical Protein, at 258219 to 259363 15213

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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252,147 + 15211 mRNA_6843 0.14 0.3
252,160 - 15211 mRNA_6843 0.16 -1.3
252,165 + 15211 mRNA_6843 0.16 -1.6
252,315 + 15211 mRNA_6843 0.36 -1.3
252,324 - 15211 mRNA_6843 0.37 -0.7
252,330 - 15211 mRNA_6843 0.38 -0.4
252,416 - 15211 mRNA_6843 0.49 -1.3
252,599 - 15211 mRNA_6843 0.72 -0.2
252,610 - 15211 mRNA_6843 0.74 -1.9
253,184 - -0.3
253,309 + 0.5
253,494 - 0.2
253,665 + 15212 mRNA_6844 0.11 0.7
253,724 + 15212 mRNA_6844 0.13 -0.4
253,733 - 15212 mRNA_6844 0.13 -0.3
253,761 - 15212 mRNA_6844 0.13 -1.2
253,788 + 15212 mRNA_6844 0.14 1.0
254,188 + 15212 mRNA_6844 0.22 -1.2
254,330 + 15212 mRNA_6844 0.25 -1.2
254,607 - 15212 mRNA_6844 0.30 1.8
254,663 - 15212 mRNA_6844 0.31 2.6
254,728 - 15212 mRNA_6844 0.33 0.9
254,776 + 15212 mRNA_6844 0.33 0.2
255,611 - 15212 mRNA_6844 0.50 -0.3
258,228 - -0.4
258,290 + 0.6
258,445 - 15213 mRNA_6845 0.20 -0.6
258,447 + 15213 mRNA_6845 0.20 -0.8
258,676 - 15213 mRNA_6845 0.40 -0.4
258,798 - 15213 mRNA_6845 0.51 3.5
258,811 + 15213 mRNA_6845 0.52 0.0
258,812 + 15213 mRNA_6845 0.52 -0.5
258,907 + 15213 mRNA_6845 0.60 0.4
258,981 + 15213 mRNA_6845 0.67 -1.3
259,055 - 15213 mRNA_6845 0.73 0.5