Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6827

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6826: 15194 - KOG2061 Uncharacterized MYND Zn-finger protein, at 219727 to 220528 15194 mRNA_6827: 15195 - K19029 PFKFB2 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 2, at 220795 to 223587 15195 mRNA_6828: 15196 - K17338 REEP1_2_3_4 receptor expression-enhancing protein 1/2/3/4, at 223853 to 225358 15196

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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219,825 + 15194 mRNA_6826 0.12 0.4
220,278 - 15194 mRNA_6826 0.69 -3.5
220,285 + 15194 mRNA_6826 0.70 -0.7
220,292 - 15194 mRNA_6826 0.70 -1.2
220,426 + 15194 mRNA_6826 0.87 0.2
220,579 + -1.2
220,605 - 0.6
220,617 - -1.0
220,625 + 0.4
220,634 - -0.2
220,639 + 1.4
220,866 - -2.3
220,887 + -0.5
220,913 + -0.4
220,915 + 0.1
220,965 + -0.3
221,042 - 0.6
221,326 + 15195 mRNA_6827 0.19 1.0
221,329 - 15195 mRNA_6827 0.19 -0.1
221,417 + 15195 mRNA_6827 0.22 -0.2
221,911 - 15195 mRNA_6827 0.40 -2.2
222,947 - 15195 mRNA_6827 0.77 -1.1
223,094 - 15195 mRNA_6827 0.82 1.1
223,099 - 15195 mRNA_6827 0.82 0.4
223,103 + 15195 mRNA_6827 0.83 -0.3
223,104 + 15195 mRNA_6827 0.83 -1.8
223,111 + 15195 mRNA_6827 0.83 -0.6
223,149 + 15195 mRNA_6827 0.84 0.3
223,253 + 15195 mRNA_6827 0.88 -0.4
223,262 - 15195 mRNA_6827 0.88 -1.1
223,370 + -0.1
223,371 - -0.1
223,473 - -0.8
223,491 - 0.7
223,495 - 0.8
223,517 - 0.3
223,536 - -0.3
223,540 + 0.0
223,541 + -0.0
223,541 + 0.2
223,682 - -1.3
223,865 + 0.3
224,274 - 15196 mRNA_6828 0.28 2.7
224,502 - 15196 mRNA_6828 0.43 -0.0