Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6817

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6816: 15184 - K02437 gcvH, GCSH glycine cleavage system H protein, at 202088 to 202810 15184 mRNA_6817: 15185 - KOG3525 Subtilisin-like proprotein convertase, at 203064 to 206112 15185 mRNA_6818: 15186 - KOG0729 26S proteasome regulatory complex, ATPase RPT1, at 206564 to 206841 15186 mRNA_6819: 15187 - SUPERFAMILY--SSF103107, at 207013 to 207504 15187

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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202,851 + 1.3
202,859 - 2.6
202,865 + 2.0
202,866 - 0.6
202,876 - -1.2
202,888 - -0.6
202,902 + -1.0
202,919 + -0.7
202,924 - -1.9
203,045 - 0.3
203,070 - 1.2
203,744 + 15185 mRNA_6817 0.22 -2.3
203,744 + 15185 mRNA_6817 0.22 0.0
204,022 + 15185 mRNA_6817 0.31 -2.0
204,138 - 15185 mRNA_6817 0.35 0.2
204,293 - 15185 mRNA_6817 0.40 -0.3
204,373 + 15185 mRNA_6817 0.43 -1.3
204,646 + 15185 mRNA_6817 0.52 -1.0
204,775 + 15185 mRNA_6817 0.56 1.6
204,776 + 15185 mRNA_6817 0.56 -1.3
204,891 - 15185 mRNA_6817 0.60 -2.1
205,064 - 15185 mRNA_6817 0.66 -3.2
205,172 - 15185 mRNA_6817 0.69 0.2
205,334 - 15185 mRNA_6817 0.74 1.2
205,417 + 15185 mRNA_6817 0.77 0.0
205,483 - 15185 mRNA_6817 0.79 -0.4
205,590 - 15185 mRNA_6817 0.83 -0.8
205,870 + 1.3
206,044 - 2.3
206,810 + 15186 mRNA_6818 0.88 0.2