Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6808

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6807: 15175 - HMMPfam-GRIP domain-PF01465,ProSiteProfiles-GRIP domain profile.-PS50913,SMART-golgin-97, RanBP2alpha,Imh1p and p230/golgin-245-SM00755, at 178332 to 182273 15175 mRNA_6808: 15176 - K12856 PRPF8, PRP8 pre-mRNA-processing factor 8, at 182860 to 191504 15176 mRNA_6809: 15177 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 191872 to 193044 15177

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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182,204 - 1.6
182,215 - -0.4
182,362 + -0.4
182,362 + -0.2
182,365 - 0.3
182,383 - 0.8
182,404 - 1.2
182,501 - 1.5
182,515 - -0.2
182,522 - -0.7
182,526 + -1.1
182,526 - -0.1
182,527 + 0.5
182,532 + 0.6
182,542 + -0.1
182,548 + 0.9
182,548 + -0.1
182,548 + -0.3
182,550 + 0.6
182,678 - -0.5
182,680 - -0.4
182,682 - 3.3
182,818 - -0.7
182,838 - -0.1
184,832 + 15176 mRNA_6808 0.23 1.3
186,906 + 15176 mRNA_6808 0.47 0.3
188,886 + 15176 mRNA_6808 0.70 1.4
188,995 + 15176 mRNA_6808 0.71 1.2
191,654 - -0.5
191,681 - 0.5
191,682 + -0.7
191,830 + 0.2
191,937 + -0.8
192,099 + 15177 mRNA_6809 0.19 -0.9
192,107 - 15177 mRNA_6809 0.20 -0.8
192,296 + 15177 mRNA_6809 0.36 -1.0