Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6804

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6803: 15171 - KOG3131 Uncharacterized conserved protein, at 172404 to 173557 15171 mRNA_6804: 15172 - HMMPfam-CFEM domain-PF05730, at 173731 to 174873 15172 mRNA_6805: 15173 - Hypothetical Protein, at 174992 to 176183 15173

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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172,859 + 15171 mRNA_6803 0.39 -1.2
172,870 - 15171 mRNA_6803 0.40 1.9
173,001 + 15171 mRNA_6803 0.52 -1.4
173,129 + 15171 mRNA_6803 0.63 -2.0
173,163 + 15171 mRNA_6803 0.66 0.0
173,273 - 15171 mRNA_6803 0.75 1.6
173,436 + 15171 mRNA_6803 0.89 -0.1
173,439 - 15171 mRNA_6803 0.90 -3.8
173,604 - 2.1
173,712 - -0.4
173,750 + -2.0
173,769 - -0.8
173,769 + -1.4
173,769 - -0.5
173,770 + -1.5
173,770 - 0.1
173,771 - 2.5
173,778 + -0.3
173,784 + 0.1
173,784 - -0.1
173,791 + -0.0
173,793 + -0.5
173,905 - 15172 mRNA_6804 0.15 -0.7
173,915 - 15172 mRNA_6804 0.16 2.3
173,916 - 15172 mRNA_6804 0.16 -1.0
173,928 + 15172 mRNA_6804 0.17 -0.0
173,953 + 15172 mRNA_6804 0.19 1.3
173,974 + 15172 mRNA_6804 0.21 -1.5
174,101 + 15172 mRNA_6804 0.32 1.8
174,342 - 15172 mRNA_6804 0.53 -3.3
174,637 + 15172 mRNA_6804 0.79 0.9
174,640 - 15172 mRNA_6804 0.80 0.6
174,658 + 15172 mRNA_6804 0.81 1.1
174,749 + 15172 mRNA_6804 0.89 1.0
174,755 + 15172 mRNA_6804 0.90 0.1
175,006 + -0.1
175,139 + 15173 mRNA_6805 0.12 -1.1
175,378 + 15173 mRNA_6805 0.32 -0.7
175,381 - 15173 mRNA_6805 0.33 0.4
175,460 + 15173 mRNA_6805 0.39 -1.7
175,841 + 15173 mRNA_6805 0.71 -0.5