Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6782

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6780: 15148 - KOG4288 Predicted oxidoreductase, at 115933 to 117029 15148 mRNA_6781: 15149 - Hypothetical Protein, at 117280 to 117859 15149 mRNA_6782: 15150 - HMMPfam-Man1-Src1p-C-terminal domain-PF09402,HMMPfam-HeH/LEM domain-PF12949, at 117941 to 121019 15150 mRNA_6783: 15151 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 121260 to 121958 15151

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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117,211 + 2.1
117,214 + -0.1
117,215 - 0.5
117,221 + -0.2
117,221 + 0.2
117,240 - -2.2
117,254 + 0.3
117,809 - -0.8
118,250 - 15150 mRNA_6782 0.10 -1.9
118,267 + 15150 mRNA_6782 0.11 0.4
118,538 - 15150 mRNA_6782 0.19 1.1
119,823 + 15150 mRNA_6782 0.61 -1.6
121,152 - 0.7
121,162 - 0.5
121,198 + -0.2
121,203 - 0.6
121,204 + 0.8
121,206 + -0.1
121,216 - 1.7
121,221 + -0.2
121,337 - 15151 mRNA_6783 0.11 -0.6
121,505 - 15151 mRNA_6783 0.35 -0.4
121,526 - 15151 mRNA_6783 0.38 0.1
121,532 + 15151 mRNA_6783 0.39 0.6
121,533 + 15151 mRNA_6783 0.39 1.2
121,546 - 15151 mRNA_6783 0.41 -1.5
121,556 + 15151 mRNA_6783 0.42 1.0
121,819 - 15151 mRNA_6783 0.80 1.1
121,924 + -0.4
121,962 + -0.4