Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6736

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6735: 15103 - Hypothetical Protein, at 24942 to 26366 15103 mRNA_6736: 15104 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 26533 to 28608 15104 mRNA_6737: 15105 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 29328 to 32887 15105

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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25,636 + 15103 mRNA_6735 0.49 0.9
25,745 - 15103 mRNA_6735 0.56 -0.9
25,750 + 15103 mRNA_6735 0.57 0.4
25,864 + 15103 mRNA_6735 0.65 -0.4
25,871 - 15103 mRNA_6735 0.65 0.3
25,912 + 15103 mRNA_6735 0.68 0.8
26,056 + 15103 mRNA_6735 0.78 0.3
26,301 + 1.1
26,330 + 1.6
26,504 + -0.6
26,531 + -1.0
26,534 - -0.2
26,588 - 0.5
26,629 + 0.9
26,646 + -0.1
26,751 - 15104 mRNA_6736 0.11 -0.3
26,781 - 15104 mRNA_6736 0.12 0.5
26,927 - 15104 mRNA_6736 0.19 1.2
27,128 + 15104 mRNA_6736 0.29 1.0
27,389 + 15104 mRNA_6736 0.41 -2.4
27,464 - 15104 mRNA_6736 0.45 -0.5
27,485 + 15104 mRNA_6736 0.46 -1.6
27,506 + 15104 mRNA_6736 0.47 -1.7
27,607 - 15104 mRNA_6736 0.52 0.1
27,825 + 15104 mRNA_6736 0.62 0.1
28,048 - 15104 mRNA_6736 0.73 0.1
28,082 - 15104 mRNA_6736 0.75 0.3
28,088 + 15104 mRNA_6736 0.75 0.9
28,088 + 15104 mRNA_6736 0.75 -1.2
28,123 - 15104 mRNA_6736 0.77 0.4
28,234 + 15104 mRNA_6736 0.82 1.1
28,265 + 15104 mRNA_6736 0.83 1.8
28,374 - 15104 mRNA_6736 0.89 -1.2
28,500 - -1.0
28,653 - 0.4
28,712 - -0.9
28,946 + -0.0
28,970 + 0.5
28,990 + 0.9
29,115 - 0.9
29,121 - 0.1
29,124 + 1.1
29,269 + -0.8
29,399 - 0.1
29,449 + -1.6
29,540 - -0.9
29,550 - 1.0
29,585 - -0.1
29,606 + 1.5