Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6729

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6728: 15096 - K14309 NUP93, NIC96 nuclear pore complex protein Nup93, at 5048 to 8579 15096 mRNA_6729: 15097 - HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863, at 8871 to 11490 15097 mRNA_6730: 15098 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 12080 to 14125 15098

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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8,663 - -0.1
9,084 - -0.8
9,541 - 15097 mRNA_6729 0.26 0.9
9,667 - 15097 mRNA_6729 0.30 -0.9
10,196 + 15097 mRNA_6729 0.51 0.8
10,197 - 15097 mRNA_6729 0.51 1.3
10,577 - 15097 mRNA_6729 0.65 -0.2
10,710 - 15097 mRNA_6729 0.70 1.6
10,781 + 15097 mRNA_6729 0.73 1.0
10,787 + 15097 mRNA_6729 0.73 0.4
10,854 + 15097 mRNA_6729 0.76 2.4
10,869 - 15097 mRNA_6729 0.76 -0.2
10,948 + 15097 mRNA_6729 0.79 -1.4
11,038 - 15097 mRNA_6729 0.83 0.2
11,139 - 15097 mRNA_6729 0.87 0.4
11,157 + 15097 mRNA_6729 0.87 0.9
11,328 + 1.8
11,378 + 1.2
11,390 - 0.1
11,574 - 0.5
11,608 - 0.5
11,712 - -0.5
11,716 + 0.3
11,855 - 0.3
11,903 - 0.2
11,990 - 0.1
11,994 - -0.2
12,015 - -0.5
12,123 + 0.5
12,165 - 0.4
12,185 + 0.2
12,201 + 0.1
12,314 - 15098 mRNA_6730 0.11 0.4
12,315 + 15098 mRNA_6730 0.11 2.1
12,327 - 15098 mRNA_6730 0.12 -1.2
12,329 - 15098 mRNA_6730 0.12 -0.2
12,332 + 15098 mRNA_6730 0.12 1.5