Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6647

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6646: 15014 - K14647 vpr minor extracellular serine protease Vpr, at 1337672 to 1341391 15014 mRNA_6647: 15015 - HMMPfam-Peroxisomal biogenesis factor 11 (PEX11)-PF05648, at 1341651 to 1342937 15015 mRNA_6648: 15016 - BLAST Gluconolactonase [Termitomyces sp. J132], at 1342998 to 1344316 15016

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,340,700 - 15014 mRNA_6646 0.81 -0.3
1,340,708 + 15014 mRNA_6646 0.82 -0.2
1,341,045 - 0.0
1,341,216 + -0.8
1,341,343 - -3.0
1,341,354 + -3.0
1,341,489 + 1.3
1,341,491 + -0.6
1,341,502 + 0.1
1,341,528 - 0.7
1,341,530 - -2.5
1,341,559 - -0.7
1,341,583 + 0.2
1,341,611 - 0.2
1,341,616 + -0.2
1,341,618 + 0.1
1,341,655 - 2.1
1,341,763 + 0.1
1,341,785 - 15015 mRNA_6647 0.10 -0.3
1,341,819 - 15015 mRNA_6647 0.13 0.5
1,341,934 + 15015 mRNA_6647 0.22 -0.5
1,342,200 - 15015 mRNA_6647 0.43 -1.9
1,342,492 - 15015 mRNA_6647 0.65 -0.3
1,342,542 + 15015 mRNA_6647 0.69 0.4
1,342,568 + 15015 mRNA_6647 0.71 -1.6
1,342,646 + 15015 mRNA_6647 0.77 -1.7
1,342,649 - 15015 mRNA_6647 0.78 -1.3
1,342,671 + 15015 mRNA_6647 0.79 -2.3
1,342,678 + 15015 mRNA_6647 0.80 -0.2
1,342,692 - 15015 mRNA_6647 0.81 0.9
1,342,798 - 15015 mRNA_6647 0.89 -1.9
1,342,961 - -1.7
1,342,962 - -1.6
1,342,963 + 0.3
1,342,975 + 0.5
1,343,120 - -0.6
1,343,121 + 1.3
1,343,140 - 15016 mRNA_6648 0.11 -0.2
1,343,271 - 15016 mRNA_6648 0.21 0.9
1,343,290 + 15016 mRNA_6648 0.22 -0.0
1,343,430 + 15016 mRNA_6648 0.33 0.6