Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6644

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6643: 15011 - KOG2983 Uncharacterized conserved protein, at 1330275 to 1331625 15011 mRNA_6644: 15012 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 1332034 to 1334144 15012

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,331,731 - 0.2
1,331,741 + 0.9
1,331,744 + 1.2
1,331,752 + 2.4
1,331,780 + 0.1
1,331,919 + -0.6
1,331,920 - -0.3
1,331,924 - -2.2
1,331,934 - 0.3
1,331,940 + 0.4
1,331,940 + -0.2
1,331,942 + -0.6
1,331,954 - -2.9
1,331,961 - 0.4
1,331,965 - -0.4
1,331,965 - 0.0
1,331,966 - 1.6
1,331,967 + -2.3
1,332,093 + -0.6
1,332,128 + -0.9
1,332,242 + -1.3
1,332,279 - 15012 mRNA_6644 0.12 2.0
1,332,290 - 15012 mRNA_6644 0.12 2.6
1,332,384 - 15012 mRNA_6644 0.17 0.5
1,332,411 - 15012 mRNA_6644 0.18 -1.7
1,332,583 + 15012 mRNA_6644 0.26 -1.8
1,333,261 - 15012 mRNA_6644 0.58 -0.2
1,333,543 - 15012 mRNA_6644 0.71 -0.1
1,333,612 + 15012 mRNA_6644 0.75 -0.6
1,333,748 - 15012 mRNA_6644 0.81 0.0
1,334,034 - -0.2
1,334,140 - 1.6
1,334,294 - 1.1
1,334,324 - 0.5
1,334,356 + 1.4
1,334,369 + -0.2
1,334,392 + 2.0
1,334,435 + 1.8
1,334,438 - -2.2
1,334,447 - -0.6
1,334,464 + -2.9
1,334,464 + -0.1
1,334,467 - 0.4
1,334,495 - 0.2
1,334,496 - -0.1
1,334,499 - -0.6
1,334,503 + 0.4
1,334,508 - -1.7
1,334,510 - -1.9
1,334,516 + -0.5
1,334,523 - 2.0
1,334,527 - -0.9
1,334,529 - 1.4
1,334,529 + -0.8
1,334,544 + 0.2
1,334,552 + -0.3
1,334,553 + -1.2
1,334,556 - 2.0
1,334,573 - -0.1
1,334,574 + 0.6
1,334,574 + 0.7
1,334,579 - 0.1
1,334,585 - -0.3
1,334,588 + 1.1
1,334,590 - 0.6
1,334,592 + -0.1
1,334,593 - 2.0
1,334,612 + 0.6
1,334,614 - -0.2
1,334,615 - -0.0
1,334,623 + -0.3
1,334,623 - -0.9
1,334,654 - 0.3
1,334,655 - -0.1
1,334,672 - -0.1
1,334,676 - 1.0
1,334,681 - 1.4
1,334,687 - 1.6
1,334,690 - -1.2
1,334,691 + -0.6
1,334,700 + 0.7
1,334,701 - 0.6
1,334,702 + -0.6
1,334,712 - 1.2
1,334,712 - 1.1
1,334,714 - 1.2
1,334,726 - 2.4
1,334,731 - 0.1
1,334,757 - 0.7
1,334,760 - -1.1
1,334,764 + 2.4
1,334,773 + 0.9
1,334,784 + -0.3
1,334,792 + 0.1
1,334,820 + 0.8
1,334,822 - 0.8
1,334,827 + -0.9
1,334,838 + 0.3
1,334,856 - -0.2
1,334,875 + -0.1
1,334,882 - 0.2
1,334,885 - -0.1
1,334,898 - -0.7
1,334,915 - -0.5
1,334,915 + -0.0
1,334,920 + 2.2
1,334,924 + -0.8
1,334,932 - -1.1
1,334,959 - -0.4
1,334,961 + 0.1
1,334,974 - 0.3
1,334,975 - -0.2
1,334,976 + -0.0
1,334,976 - 0.8
1,334,981 - -0.1
1,334,989 - -0.2
1,334,993 - 0.7
1,334,996 + 0.2
1,334,996 + -0.5
1,335,007 + 0.4
1,335,008 - 0.2
1,335,012 + 0.3
1,335,014 + -0.5
1,335,015 + 1.6
1,335,018 + -0.0
1,335,019 - 0.1
1,335,026 + -0.3
1,335,030 + 0.4
1,335,030 - 1.6
1,335,033 + -0.6
1,335,036 + 0.0
1,335,047 - -0.2
1,335,066 + -0.5
1,335,103 + -0.6
1,335,103 + 0.4
1,335,107 + -1.2
1,335,114 + -0.2
1,335,114 + -0.5
1,335,114 + 0.7
1,335,119 - -0.5
1,335,127 - 0.2
1,335,134 - -0.6