Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6476

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6475: 14843 - KOG3442 Uncharacterized conserved protein, at 873206 to 873968 14843 mRNA_6476: 14844 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 874196 to 881716 14844 mRNA_6477: 14845 - HMMPfam-Catalytic LigB subunit of aromatic ring-opening dioxygenase-PF02900,SUPERFAMILY--SSF53213, at 882440 to 883452 14845

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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874,051 - 0.0
874,061 + 2.2
874,082 + 0.8
874,278 + 0.1
874,370 - -2.0
874,662 - -0.1
875,063 + 14844 mRNA_6476 0.12 0.9
875,254 + 14844 mRNA_6476 0.14 2.8
875,545 + 14844 mRNA_6476 0.18 0.4
875,677 - 14844 mRNA_6476 0.20 -1.2
875,808 + 14844 mRNA_6476 0.21 -0.5
875,862 + 14844 mRNA_6476 0.22 0.1
876,275 + 14844 mRNA_6476 0.28 0.5
876,275 - 14844 mRNA_6476 0.28 -0.5
876,405 + 14844 mRNA_6476 0.29 -1.4
876,453 - 14844 mRNA_6476 0.30 0.1
876,458 - 14844 mRNA_6476 0.30 -1.5
876,458 + 14844 mRNA_6476 0.30 -2.1
876,866 + 14844 mRNA_6476 0.36 0.2
877,330 - 14844 mRNA_6476 0.42 -0.6
877,415 + 14844 mRNA_6476 0.43 1.4
877,437 - 14844 mRNA_6476 0.43 -1.4
877,466 - 14844 mRNA_6476 0.43 2.3
877,590 - 14844 mRNA_6476 0.45 -2.1
877,762 + 14844 mRNA_6476 0.47 -0.0
877,946 - 14844 mRNA_6476 0.50 -0.8
878,130 + 14844 mRNA_6476 0.52 -2.8
878,279 + 14844 mRNA_6476 0.54 0.7
878,403 + 14844 mRNA_6476 0.56 -0.2
878,476 + 14844 mRNA_6476 0.57 0.2
878,538 + 14844 mRNA_6476 0.58 -1.6
878,892 + 14844 mRNA_6476 0.62 0.2
879,471 - 14844 mRNA_6476 0.70 1.2
880,199 + 14844 mRNA_6476 0.80 0.6
880,218 - 14844 mRNA_6476 0.80 0.6
880,484 - 14844 mRNA_6476 0.84 -0.1
881,037 + 0.1
881,188 - -0.5
881,330 + -0.8
881,348 - -0.2
881,349 - 1.9
881,633 + 2.4
881,795 - 1.3
881,906 + -1.1
881,913 - 1.2
881,915 + 0.2
881,916 + -0.4
881,919 + -0.3
881,930 - 0.9
881,942 + -0.1
881,948 + 1.5
881,955 - 0.3
881,958 + -0.0
882,020 - 0.4
882,106 - -0.1
882,111 - -0.3
882,131 + 0.5
882,133 - -0.2
882,173 + 0.7
882,215 + -0.9
882,218 - -1.5
882,224 - 0.8
882,225 - 1.3
882,225 - -0.1
882,227 + 1.4
882,243 + -0.9
882,247 + -1.2
882,282 + -0.5
882,381 + 1.2
882,386 + 1.8
882,529 + -0.5
882,536 - 0.6