Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6470

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858043 to 864348 14837 mRNA_6470: 14838 - Hypothetical Protein, at 864745 to 865870 14838 mRNA_6471: 14839 - KOG0806 Carbon-nitrogen hydrolase, at 866226 to 867912 14839

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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863,932 - 1.9
863,938 - -0.6
864,093 - -0.4
864,093 - -1.9
864,182 + -0.4
864,385 - 0.3
864,401 + -0.9
864,685 + 0.9
864,793 + -0.2
864,842 + 1.5
864,869 - 14838 mRNA_6470 0.11 0.5
864,977 + 14838 mRNA_6470 0.21 0.1
864,979 + 14838 mRNA_6470 0.21 1.5
864,986 - 14838 mRNA_6470 0.21 0.2
865,031 + 14838 mRNA_6470 0.25 0.5
865,139 + 14838 mRNA_6470 0.35 -0.2
865,170 + 14838 mRNA_6470 0.38 1.4
865,302 - 14838 mRNA_6470 0.49 1.4
865,573 - 14838 mRNA_6470 0.74 -0.2
865,664 + 14838 mRNA_6470 0.82 -0.7
865,695 + 14838 mRNA_6470 0.84 1.1
865,760 + 1.0
865,873 + -0.4
866,120 - -0.0
866,129 - -0.1
866,143 - -0.5
866,179 - -1.8
866,273 - 2.7
866,341 + 0.3
866,343 - -0.6
866,344 + 1.9
866,431 + 14839 mRNA_6471 0.12 -1.0
866,438 - 14839 mRNA_6471 0.13 -2.1
866,438 - 14839 mRNA_6471 0.13 2.7
866,469 + 14839 mRNA_6471 0.14 1.0
866,608 + 14839 mRNA_6471 0.23 -1.4
866,752 - 14839 mRNA_6471 0.31 1.3
866,769 + 14839 mRNA_6471 0.32 0.0