Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6469

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6468: 14836 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 853896 to 857931 14836 mRNA_6469: 14837 - K10625 UBR1 E3 ubiquitin-protein ligase UBR1, at 858043 to 864348 14837 mRNA_6470: 14838 - Hypothetical Protein, at 864745 to 865870 14838

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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857,804 + 0.7
857,872 + 1.1
857,900 + -1.5
858,041 + 0.0
858,150 - -0.3
860,303 - 14837 mRNA_6469 0.36 0.5
861,323 - 14837 mRNA_6469 0.52 0.7
861,728 + 14837 mRNA_6469 0.58 -2.1
862,446 + 14837 mRNA_6469 0.70 -0.1
862,563 - 14837 mRNA_6469 0.72 1.8
863,932 - 1.9
863,938 - -0.6
864,093 - -0.4
864,093 - -1.9
864,182 + -0.4
864,385 - 0.3
864,401 + -0.9
864,685 + 0.9
864,793 + -0.2
864,842 + 1.5
864,869 - 14838 mRNA_6470 0.11 0.5
864,977 + 14838 mRNA_6470 0.21 0.1
864,979 + 14838 mRNA_6470 0.21 1.5
864,986 - 14838 mRNA_6470 0.21 0.2
865,031 + 14838 mRNA_6470 0.25 0.5
865,139 + 14838 mRNA_6470 0.35 -0.2
865,170 + 14838 mRNA_6470 0.38 1.4
865,302 - 14838 mRNA_6470 0.49 1.4