Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6449

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6448: 14816 - HMMPfam-F-box-like-PF12937, at 817584 to 818438 14816 mRNA_6449: 14817 - HMMPfam-Protein of unknown function (DUF1399)-PF07173, at 818867 to 821319 14817 mRNA_6450: 14818 - Hypothetical Protein, at 821969 to 822682 14818

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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818,305 + 14816 mRNA_6448 0.84 -2.0
818,492 - -0.2
818,538 - 1.6
818,651 + 0.4
818,790 - -0.3
818,859 - -0.0
818,917 - -0.8
819,025 + -0.6
819,050 + -0.2
819,184 - 14817 mRNA_6449 0.13 1.6
819,262 - 14817 mRNA_6449 0.16 0.0
819,262 + 14817 mRNA_6449 0.16 -0.8
819,317 - 14817 mRNA_6449 0.18 0.9
819,352 - 14817 mRNA_6449 0.20 1.0
819,458 - 14817 mRNA_6449 0.24 0.5
819,748 + 14817 mRNA_6449 0.36 1.5
819,871 + 14817 mRNA_6449 0.41 0.6
819,943 - 14817 mRNA_6449 0.44 -0.8
820,133 + 14817 mRNA_6449 0.52 -0.1
820,199 - 14817 mRNA_6449 0.54 -1.1
820,330 - 14817 mRNA_6449 0.60 -0.0
820,441 + 14817 mRNA_6449 0.64 0.8
820,459 - 14817 mRNA_6449 0.65 1.1
820,469 + 14817 mRNA_6449 0.65 1.3
820,480 + 14817 mRNA_6449 0.66 0.4
820,524 - 14817 mRNA_6449 0.68 -0.4
821,069 - 14817 mRNA_6449 0.90 0.7
821,090 - 0.9
821,099 + -0.7
821,835 + 1.5
821,884 - 0.6
821,928 - 0.8
821,984 + -0.4
822,261 + 14818 mRNA_6450 0.41 2.5