Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6441

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6440: 14808 - Hypothetical Protein, at 802192 to 802893 14808 mRNA_6441: 14809 - K07200 PRKAG 5'-AMP-activated protein kinase, regulatory gamma subunit, at 803025 to 805267 14809 mRNA_6442: 14810 - Hypothetical Protein, at 805308 to 806483 14810

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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802,135 + -0.1
802,282 + 14808 mRNA_6440 0.13 0.6
802,556 - 14808 mRNA_6440 0.52 1.7
802,594 - 14808 mRNA_6440 0.57 -1.4
802,655 - 14808 mRNA_6440 0.66 2.2
802,696 + 14808 mRNA_6440 0.72 -0.3
802,729 - 14808 mRNA_6440 0.76 0.6
802,773 + 14808 mRNA_6440 0.83 0.1
802,844 - -0.1
802,908 + 1.8
803,674 - 14809 mRNA_6441 0.29 -1.2
803,750 - 14809 mRNA_6441 0.32 2.4
804,305 + 14809 mRNA_6441 0.57 -1.7
804,328 - 14809 mRNA_6441 0.58 -0.4
804,424 + 14809 mRNA_6441 0.62 -2.2
804,711 + 14809 mRNA_6441 0.75 -0.7
804,715 + 14809 mRNA_6441 0.75 -3.4
805,114 - -1.3
805,131 + 1.5
805,151 - -2.5
805,182 + -1.7
805,306 + 0.3
805,315 + 1.1
805,328 + -0.4
805,353 + 1.0
805,447 - 14810 mRNA_6442 0.12 -1.5
805,465 + 14810 mRNA_6442 0.13 1.0
805,469 + 14810 mRNA_6442 0.14 1.1
805,488 - 14810 mRNA_6442 0.15 1.1
805,491 + 14810 mRNA_6442 0.16 -0.0
805,503 + 14810 mRNA_6442 0.17 -0.8
805,619 + 14810 mRNA_6442 0.26 -1.0
805,745 - 14810 mRNA_6442 0.37 1.0
805,757 - 14810 mRNA_6442 0.38 -0.1
805,766 + 14810 mRNA_6442 0.39 2.1
805,771 + 14810 mRNA_6442 0.39 -0.4
805,960 + 14810 mRNA_6442 0.55 1.0
805,990 + 14810 mRNA_6442 0.58 -0.5
806,061 + 14810 mRNA_6442 0.64 0.3
806,130 - 14810 mRNA_6442 0.70 -0.5