Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6366

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6365: 14733 - HMMPfam-Trypsin-like peptidase domain-PF13365,SUPERFAMILY--SSF50494, at 645356 to 646894 14733 mRNA_6366: 14734 - BLAST putative membrane permease [Rhizoctonia solani 123E], at 647302 to 648659 14734 mRNA_6367: 14735 - Hypothetical Protein, at 649403 to 649822 14735

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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646,492 - 14733 mRNA_6365 0.74 2.8
646,496 - 14733 mRNA_6365 0.74 0.1
646,776 + 1.2
646,943 - -0.5
646,956 - 1.3
647,048 - -0.9
647,080 - 0.1
647,124 - -0.6
647,129 - 0.4
647,133 + 0.1
647,175 - -2.1
647,200 + -0.7
647,203 - -0.4
647,218 + -0.6
647,220 + 0.5
647,230 - -1.7
647,230 + -0.8
647,233 + -0.0
647,246 + 0.2
647,358 - -0.0
647,361 + 0.1
647,366 + -1.1
647,376 + -0.1
647,397 - 0.1
647,415 + 1.1
647,513 + 14734 mRNA_6366 0.16 0.3
647,518 - 14734 mRNA_6366 0.16 0.9
647,534 + 14734 mRNA_6366 0.17 -1.1
647,538 + 14734 mRNA_6366 0.17 -1.0
647,550 + 14734 mRNA_6366 0.18 0.1
647,550 + 14734 mRNA_6366 0.18 0.4
647,660 - 14734 mRNA_6366 0.26 0.9
647,859 - 14734 mRNA_6366 0.41 -1.1
647,957 + 14734 mRNA_6366 0.48 -1.7
648,663 + 1.4
648,711 + 1.1
648,853 - -0.7
648,937 - 0.2
648,967 - 1.1
649,117 + 1.7
649,120 - -0.3
649,132 + 0.3
649,135 - -0.8