Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6362

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6361: 14729 - K08832 SRPK3, STK23 serine/threonine-protein kinase SRPK3, at 635268 to 638035 14729 mRNA_6362: 14730 - SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 638595 to 641031 14730 mRNA_6363: 14731 - K14553 UTP18 U3 small nucleolar RNA-associated protein 18, at 641098 to 643745 14731

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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637,962 + -1.8
638,101 + -1.5
638,101 + 0.5
638,102 + -0.0
638,236 + 0.8
638,236 - -1.0
638,242 - -0.2
638,260 - 1.1
638,386 - -2.6
638,391 - 0.3
638,407 + 0.3
638,541 - 0.6
639,765 - 14730 mRNA_6362 0.48 1.0
639,872 + 14730 mRNA_6362 0.52 0.2
640,205 - 14730 mRNA_6362 0.66 0.2
640,351 - 14730 mRNA_6362 0.72 0.0
640,479 + 14730 mRNA_6362 0.77 -0.1
640,515 - 14730 mRNA_6362 0.79 -0.9
640,520 + 14730 mRNA_6362 0.79 0.6
640,694 - 14730 mRNA_6362 0.86 -1.0
640,971 + 0.8