Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6327

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6326: 14694 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 554507 to 555774 14694 mRNA_6327: 14695 - K13124 MORG1 mitogen-activated protein kinase organizer 1, at 555929 to 557274 14695 mRNA_6328: 14696 - Hypothetical Protein, at 558019 to 558735 14696

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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555,351 + 14694 mRNA_6326 0.67 -0.9
555,364 - 14694 mRNA_6326 0.68 -1.5
555,668 + 0.1
555,679 - 2.0
555,813 + -0.0
555,827 + -0.0
555,844 + -1.8
555,855 - -0.3
555,878 + -2.4
556,083 + 14695 mRNA_6327 0.11 -1.4
556,095 - 14695 mRNA_6327 0.12 1.9
556,380 + 14695 mRNA_6327 0.34 0.7
556,687 + 14695 mRNA_6327 0.56 -0.3
557,226 - 0.7
557,251 + -1.1
557,266 - -1.0
557,284 - -2.8
557,379 + -0.6
557,382 - 1.7
557,401 - -2.0
557,402 - 2.0
557,402 + -1.6
557,410 - 0.3
557,412 - 1.5
557,414 - 2.3
557,419 + -2.4
557,419 + 0.3
557,423 + 1.4
557,454 + 0.7
557,543 - -0.1
557,547 - 0.2
557,554 - -1.4
557,555 - -0.7
557,556 - 1.1
557,560 - -1.0
557,568 + 0.3
557,575 + 1.0
557,575 + 0.9
557,594 + 0.8
557,594 + 1.2
557,669 + 0.1
557,671 - -1.2
557,673 + -0.5
557,686 + -0.1
557,688 - -1.3
557,689 - -0.5
557,690 - -0.6
557,690 - -0.4
557,694 - -0.4
557,695 - 0.9
557,700 + 1.9
557,700 + -0.5
557,704 + -2.6
557,707 + -1.0
557,709 - -1.4
557,710 - 0.0
557,713 + 0.7
557,719 - 1.5
557,739 - 0.1
557,749 + -1.5
557,752 - -0.5
557,753 + 0.2
557,755 - 1.1
557,757 - 1.1
557,793 + -0.9
557,901 - 0.3
558,036 - 1.2
558,043 + -0.6
558,045 + 0.1
558,055 + 0.9
558,096 - 14696 mRNA_6328 0.11 0.0
558,196 - 14696 mRNA_6328 0.25 0.4