Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6307

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487533 to 494216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494501 to 498811 14675 mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499751 to 502382 14676

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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493,554 - 0.7
494,285 - 2.1
494,308 - 1.5
494,415 + -0.2
494,446 - 1.1
494,463 + 0.1
494,591 + 1.5
494,604 - -0.5
494,604 - -0.5
494,613 + 0.9
494,615 - 1.6
494,643 + 2.6
494,755 - -1.5
494,779 - -1.0
494,881 - -1.6
494,893 - 0.6
494,894 + 1.9
494,900 - 0.9
494,909 + -1.3
494,912 - 0.3
494,917 + 1.4
494,930 + 0.2
494,943 - 14675 mRNA_6307 0.10 -0.9
495,071 - 14675 mRNA_6307 0.13 0.8
495,208 - 14675 mRNA_6307 0.16 -0.7
495,913 + 14675 mRNA_6307 0.33 0.0
496,079 + 14675 mRNA_6307 0.37 -0.6
496,225 + 14675 mRNA_6307 0.40 1.5
496,380 + 14675 mRNA_6307 0.44 1.2
496,663 - 14675 mRNA_6307 0.50 0.8
497,408 - 14675 mRNA_6307 0.67 -1.1
497,569 + 14675 mRNA_6307 0.71 -1.0
497,714 + 14675 mRNA_6307 0.75 1.1
498,131 + 14675 mRNA_6307 0.84 0.4
498,462 - -2.6
498,572 - 1.2
498,736 + -1.4
498,878 + 1.5
498,889 - 0.5
498,894 + 1.1
499,024 - 0.8
499,026 - -3.2
499,027 + -1.4
499,031 - 2.9
499,039 + -0.9
499,048 - 0.9
499,050 + 0.4
499,059 + -0.5
499,065 - -0.2
499,100 + 0.4
499,127 + -0.2
499,127 + -0.0
499,129 + 0.3
499,129 - -0.2
499,136 - 0.5
499,139 - -0.2
499,140 + -0.4
499,147 + -2.1
499,152 - 1.2
499,153 - -0.3
499,170 - -1.7
499,174 - -1.7
499,176 - 0.6
499,178 + 0.1
499,179 - -0.1
499,179 + -0.4
499,182 + 1.1
499,183 + -2.4
499,191 - -0.9
499,205 + -0.9
499,220 + -0.2
499,314 - 1.0
499,321 - 0.0
499,323 - 0.8
499,333 - 1.6
499,335 + -0.1
499,338 + -0.0
499,341 - 1.9
499,341 - -0.4
499,342 - 0.2
499,351 + 1.0
499,372 + 0.2
499,482 - -0.7
499,482 - -2.5
499,485 - 1.1
499,486 + -0.9
499,487 - -0.9
499,569 - -0.4
499,625 - 0.6
499,651 - 1.0
499,775 - -0.6