Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6287

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6286: 14654 - HMMPfam-Protein of unknown function (DUF3128)-PF11326, at 444214 to 444568 14654 mRNA_6287: 14655 - K01262 pepP Xaa-Pro aminopeptidase, at 445052 to 447744 14655 mRNA_6288: 14656 - KOG0876 Manganese superoxide dismutase, at 448035 to 449039 14656

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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444,722 - 0.7
444,853 - 0.0
444,867 - 0.7
444,868 - 0.4
444,872 + 1.4
444,978 + -2.3
445,014 - 0.5
445,015 - -0.2
445,021 - -1.2
445,036 - 1.7
445,050 - -1.5
445,052 - -0.3
445,059 + 1.5
445,144 + -0.7
445,168 - -0.6
445,177 - -1.1
445,177 + 0.2
445,209 + -3.9
445,212 + -0.3
445,221 - 0.6
445,287 + -1.2
445,333 - 14655 mRNA_6287 0.10 0.1
445,347 - 14655 mRNA_6287 0.11 2.2
445,351 + 14655 mRNA_6287 0.11 0.1
445,670 + 14655 mRNA_6287 0.23 0.6
445,726 + 14655 mRNA_6287 0.25 0.4
445,759 - 14655 mRNA_6287 0.26 -0.9
445,767 - 14655 mRNA_6287 0.27 -0.1
446,147 + 14655 mRNA_6287 0.41 0.6
446,331 + 14655 mRNA_6287 0.47 0.9
446,660 - 14655 mRNA_6287 0.60 -0.8
446,680 + 14655 mRNA_6287 0.60 -1.7
447,210 - 14655 mRNA_6287 0.80 -1.3
447,778 - 0.6
447,957 + 1.4
448,489 - 14656 mRNA_6288 0.45 -0.0
448,520 + 14656 mRNA_6288 0.48 1.2