Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6276

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6275: 14643 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 420027 to 422108 14643 mRNA_6276: 14644 - K12615 EDC3 enhancer of mRNA-decapping protein 3, at 422902 to 424921 14644 mRNA_6277: 14645 - KOG2812 Uncharacterized conserved protein, at 425050 to 426717 14645

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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421,911 + -2.1
421,925 + -0.2
422,006 + -2.0
422,031 + -1.8
422,356 - -2.0
422,361 + 1.0
422,377 - -0.6
422,386 - -0.9
422,400 + -0.7
422,484 - -0.9
422,496 - 0.7
422,509 + 0.4
422,511 + -0.1
422,526 - 0.2
422,668 - 0.3
422,671 - 0.5
422,676 - -0.2
422,681 + -0.5
422,684 + 0.5
422,706 + -1.0
422,816 - -1.7
422,816 + 0.2
422,828 + 0.2
422,842 + 0.0
422,845 + -1.1
422,847 + 0.2
422,970 + -0.4
422,972 + 3.1
422,973 - 0.7
422,977 + 0.7
422,979 + 0.1
422,979 + 1.8
422,996 - 2.1
423,117 + 14644 mRNA_6276 0.11 -1.2
423,127 - 14644 mRNA_6276 0.11 0.7
423,277 + 14644 mRNA_6276 0.19 -1.1
423,575 + 14644 mRNA_6276 0.33 1.0
423,844 + 14644 mRNA_6276 0.47 -0.9
423,870 + 14644 mRNA_6276 0.48 -0.2
423,985 + 14644 mRNA_6276 0.54 0.0
424,067 + 14644 mRNA_6276 0.58 0.1
424,288 + 14644 mRNA_6276 0.69 1.6
424,886 - 0.3
424,897 - -1.7