Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6267

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6266: 14634 - Hypothetical Protein, at 396556 to 399256 14634 mRNA_6267: 14635 - KOG1721 FOG Zn-finger, at 399476 to 403885 14635 mRNA_6268: 14636 - HMMPfam-Survival motor neuron protein (SMN)-PF06003, at 404053 to 405342 14636

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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398,544 + 14634 mRNA_6266 0.74 -0.6
399,156 - 0.7
399,162 - 0.1
399,165 - 1.6
399,179 - 0.5
399,185 + -0.3
399,188 - -0.1
399,300 - 1.2
399,305 - -0.1
399,305 - -0.9
399,306 - 0.1
399,315 + -1.3
399,316 - -0.0
399,316 - -1.0
399,318 - 0.6
399,324 - -3.8
399,325 + 0.6
399,338 + -0.2
399,344 - 0.3
399,349 - -3.2
399,489 + 1.3
399,523 + 2.2
399,654 + -1.1
399,796 - 0.8
399,915 - 1.5
400,496 - 14635 mRNA_6267 0.23 0.2
401,055 + 14635 mRNA_6267 0.36 1.8
401,263 - 14635 mRNA_6267 0.41 -0.1
401,636 - 14635 mRNA_6267 0.49 -0.5
402,015 + 14635 mRNA_6267 0.58 -0.2
402,045 + 14635 mRNA_6267 0.58 0.8
402,328 + 14635 mRNA_6267 0.65 1.3
402,496 - 14635 mRNA_6267 0.68 -0.5
402,816 + 14635 mRNA_6267 0.76 -0.3
402,901 - 14635 mRNA_6267 0.78 -0.4
403,180 - 14635 mRNA_6267 0.84 1.0
403,184 + 14635 mRNA_6267 0.84 2.6
403,341 + 14635 mRNA_6267 0.88 1.1
403,477 + -0.3
403,491 + 1.5
403,496 - 1.0
403,517 - -0.9
403,521 - 1.6
403,641 - 1.9
403,663 + 1.3
403,667 - 1.0
403,667 - 0.3
403,673 + 1.3
403,683 + 1.5
403,684 + 1.1
403,699 + 1.1
403,945 - 1.5
403,952 - 0.7
403,967 + 0.8
403,973 + 0.4
403,973 + 0.2
403,982 - 0.4
403,985 - 0.3
403,986 + 2.0
403,986 + -1.0
403,989 + -0.2
403,994 - 2.9
403,995 + 2.3
403,998 + -0.8
403,999 - 1.2
404,000 + 0.5
404,005 + 0.7
404,007 + -1.1
404,013 + -0.0
404,021 + 1.0
404,126 - 0.7
404,133 - -0.8
404,139 - 0.0
404,143 + -1.2
404,159 + 2.9
404,164 - 0.1
404,164 - -0.2
404,288 - 14636 mRNA_6268 0.18 -0.5
404,299 - 14636 mRNA_6268 0.19 0.8