Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6260

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374998 to 377098 14627 mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377562 to 381779 14628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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377,019 - 0.1
377,463 - -0.8
377,929 - -2.0
378,598 - 14628 mRNA_6260 0.25 0.8
378,739 - 14628 mRNA_6260 0.28 -0.3
378,758 - 14628 mRNA_6260 0.28 0.1
378,900 + 14628 mRNA_6260 0.32 0.0
379,070 + 14628 mRNA_6260 0.36 -0.5
379,649 - 14628 mRNA_6260 0.49 -0.7
379,743 - 14628 mRNA_6260 0.52 0.2
379,748 + 14628 mRNA_6260 0.52 0.8
380,066 - 14628 mRNA_6260 0.59 -0.7
380,082 - 14628 mRNA_6260 0.60 -0.5
380,660 + 14628 mRNA_6260 0.73 -0.6
380,821 - 14628 mRNA_6260 0.77 -1.9
380,943 - 14628 mRNA_6260 0.80 -0.1
380,964 - 14628 mRNA_6260 0.81 -0.3
381,410 - -3.5
381,534 - 0.2
381,559 + -1.4
381,687 - -0.1
381,740 - 2.4
381,847 + 1.6
381,855 - 1.8
381,867 + 0.1
381,867 + 0.3
381,874 + -2.0
381,882 - -2.0
381,896 + -0.7
381,899 + -0.1
381,936 - -0.5
381,941 + -1.2
381,941 + -0.6
381,942 - 1.5
381,943 - -0.5
381,943 - 0.2
381,946 + 0.2
381,946 + 0.4
381,948 + -0.4
381,948 - -0.5
381,964 - -1.4
381,979 - -0.2
381,981 + 0.2
381,993 + 1.4
382,008 - -0.8
382,089 + -0.5
382,089 + -0.0
382,104 + 2.6
382,110 - 0.6
382,132 + 0.9
382,143 - 0.2
382,189 - -2.8
382,195 - 0.1
382,212 + -0.2
382,220 + 1.6
382,238 - -0.3
382,240 - -1.8
382,249 + -0.7
382,254 - -1.1
382,264 - 2.3
382,289 - -0.2
382,293 - -0.4
382,307 + -0.7
382,324 + -0.3
382,332 + 0.8
382,340 + 0.5
382,345 + 1.7
382,349 - -0.6
382,360 + -0.3
382,363 + -2.1
382,365 + -0.5
382,369 + -2.1
382,370 - 1.3
382,370 - 1.1
382,375 + -0.8
382,381 + -0.5
382,418 - 0.4
382,423 + -0.8
382,433 + -1.5
382,434 - -1.1
382,436 + 1.9
382,436 - -1.1
382,436 - 1.2
382,437 - -0.1
382,448 - -1.5
382,449 + -1.1
382,451 + 1.0
382,471 - 0.3
382,503 + 0.4
382,516 + -0.0
382,529 - -1.0
382,531 + -2.4
382,531 + -0.0
382,535 + -1.4
382,542 + -0.5
382,543 - -1.3
382,546 - -0.1
382,549 - 0.3
382,550 - -0.1
382,556 + -0.7
382,566 - 0.5
382,570 - -2.8
382,571 - -0.1
382,573 - -1.1
382,575 - 1.5
382,583 - -0.4
382,583 - 0.9
382,586 + -0.7
382,586 + 1.4
382,587 + 0.4
382,588 - -1.0
382,588 - 0.9
382,590 - -1.0
382,592 - -0.2
382,594 + -0.6
382,603 + -0.4
382,652 - -1.1
382,663 - -0.1
382,691 - -1.2
382,695 + -0.1
382,700 + -0.1
382,707 - -0.2
382,713 - -0.6
382,724 + -2.8
382,726 + 0.0
382,732 + -0.1