Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6259

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6258: 14626 - K01687 ilvD dihydroxy-acid dehydratase, at 371903 to 374480 14626 mRNA_6259: 14627 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 374998 to 377098 14627 mRNA_6260: 14628 - HMMPfam-Meiosis protein SPO22/ZIP4 like-PF08631, at 377562 to 381779 14628

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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374,321 + 1.6
374,481 + -1.3
374,488 + -0.3
374,512 + -0.2
374,627 + -0.5
374,628 + -1.8
374,639 + -0.1
374,639 - 2.9
374,647 + 0.7
374,648 - 0.2
374,650 - 0.2
374,668 - 0.6
374,671 - 1.1
374,676 + -1.0
374,676 + -0.1
374,720 + 0.6
374,723 + -2.4
374,724 + -1.9
374,732 + -0.7
374,743 + -0.5
374,835 - -0.4
374,838 + 1.4
374,847 - -0.4
374,861 + -3.0
374,861 + -0.2
374,882 + 0.6
374,892 + -1.4
374,901 - -0.1
374,901 + 0.6
374,911 - -0.2
374,919 + -0.1
374,925 - -1.0
374,925 - 1.0
374,928 + -0.5
374,930 + -0.5
374,932 + -0.6
374,932 + -1.0
374,934 - -2.4
374,934 - 0.6
374,935 + -0.2
374,937 + 0.1
374,937 + 0.5
374,943 + 0.8
374,946 - -0.9
374,947 + -0.0
374,948 + -0.2
374,948 - 1.2
374,951 + 1.8
374,952 + -3.2
374,954 + 0.9
374,957 - -1.5
375,055 + 0.2
375,125 + -0.4
375,393 - 14627 mRNA_6259 0.19 -1.4
375,395 - 14627 mRNA_6259 0.19 -1.1
375,429 + 14627 mRNA_6259 0.21 0.9
375,489 + 14627 mRNA_6259 0.23 1.8
375,549 + 14627 mRNA_6259 0.26 -0.0
376,003 - 14627 mRNA_6259 0.48 0.4
376,383 + 14627 mRNA_6259 0.66 0.0
377,019 - 0.1
377,463 - -0.8
377,929 - -2.0