Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6243

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6242: 14610 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 335352 to 337546 14610 mRNA_6243: 14611 - Hypothetical Protein, at 337932 to 340072 14611 mRNA_6244: 14612 - K07901 RAB8A, MEL Ras-related protein Rab-8A, at 340765 to 342148 14612

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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337,073 + 14610 mRNA_6242 0.78 -1.6
337,340 + -0.9
337,646 + 1.5
337,784 - 0.8
338,228 + 14611 mRNA_6243 0.14 1.3
338,399 + 14611 mRNA_6243 0.22 -0.8
338,816 + 14611 mRNA_6243 0.41 -2.7
339,126 + 14611 mRNA_6243 0.56 -0.9
339,238 - 14611 mRNA_6243 0.61 -0.1
339,246 - 14611 mRNA_6243 0.61 -0.6
339,247 - 14611 mRNA_6243 0.61 0.2
339,682 + 14611 mRNA_6243 0.82 -1.5
339,708 + 14611 mRNA_6243 0.83 2.4
339,846 + 14611 mRNA_6243 0.89 -0.5
339,858 + 14611 mRNA_6243 0.90 -1.0
339,861 - 1.6
339,992 + -1.4
339,998 + 0.7
340,150 + -0.0
340,297 - 0.6
340,298 + 0.7
340,307 + -0.1
340,308 - -1.1
340,421 - 0.0
340,453 - 1.5
340,557 - 2.3
340,566 - 1.9
340,573 + -0.0
340,584 + 0.3
340,588 + -0.4
340,588 - -0.7
340,691 + 0.3
340,693 - -0.8
340,741 - 2.1