Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6238

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6237: 14605 - K20061 ALY1_2, ART3_6 arrestin-related trafficking adapter 3/6, at 321480 to 324944 14605 mRNA_6238: 14606 - K13205 AAR2, C20orf4 A1 cistron-splicing factor AAR2, at 325534 to 327076 14606

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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324,552 + 14605 mRNA_6237 0.89 -1.0
324,968 + 3.2
324,991 - 1.1
325,002 - -0.8
325,127 - 0.6
325,159 + 0.3
325,292 - 2.0
325,297 + 1.1
325,308 + 1.7
325,424 - 0.3
325,441 - 1.4
325,448 - 0.2
325,460 - 1.1
325,462 - -0.0
325,463 + 1.3
325,470 + -0.6
325,473 - -0.6
325,481 + 0.2
325,495 + -1.5
325,533 - -2.0
325,556 - -2.1
325,574 + -1.2
325,598 + 0.5
326,203 + 14606 mRNA_6238 0.43 1.1
326,214 - 14606 mRNA_6238 0.44 -1.4
326,486 - 14606 mRNA_6238 0.62 1.0
326,503 + 14606 mRNA_6238 0.63 -1.2
326,505 - 14606 mRNA_6238 0.63 0.7
326,775 + 14606 mRNA_6238 0.80 -2.4
326,778 - 14606 mRNA_6238 0.81 0.9
326,802 + 14606 mRNA_6238 0.82 -1.0
326,931 + -1.0
326,941 - -0.5
326,951 + -0.1
326,952 + -2.2
327,025 + -2.0
327,069 - 0.1
327,072 - 1.6
327,103 - -1.5
327,118 + -1.4
327,367 - -2.5
327,412 + 0.2
327,530 - -2.4
327,539 + -0.4
327,547 - 0.6
327,550 + 0.4
327,553 - -0.2
327,564 - 0.1
327,703 + -0.7
327,779 - 0.2
327,808 - -0.5
327,810 + 0.8
327,821 + -0.5
327,825 + 1.4
327,837 + 2.6
327,854 - -0.1
327,862 + -0.3
327,862 + 0.0
327,881 + 0.9
327,986 - 0.6
328,015 + -1.3
328,020 - 2.7