Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6234

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6234: 14602 - K00318 PRODH proline dehydrogenase, at 315731 to 317718 14602 mRNA_6235: 14603 - K17279 REEP5_6 receptor expression-enhancing protein 5/6, at 318135 to 318876 14603

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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315,055 - 0.3
315,070 + 1.4
315,070 + -0.8
315,335 + 0.6
315,342 - -1.1
315,345 - 1.5
315,346 + 0.5
315,346 + 1.1
315,372 - -0.1
315,381 - 0.7
315,385 - -0.8
315,486 + -0.2
315,517 + -0.6
315,527 + -1.3
315,539 + 1.3
315,578 - -0.0
315,638 - 0.0
315,652 - -0.4
315,656 - 0.1
315,662 + 0.9
315,665 + -0.8
315,665 - -0.3
315,667 - -1.4
315,670 + 1.6
315,671 + 0.6
315,673 + -0.4
315,673 + 0.2
315,676 + 1.5
315,686 - -1.2
315,939 - 14602 mRNA_6234 0.10 1.5
315,967 + 14602 mRNA_6234 0.12 0.4
315,986 + 14602 mRNA_6234 0.13 -1.0
316,121 + 14602 mRNA_6234 0.20 1.1
316,392 - 14602 mRNA_6234 0.33 0.9
316,418 + 14602 mRNA_6234 0.35 0.3
316,850 - 14602 mRNA_6234 0.56 2.1
316,874 + 14602 mRNA_6234 0.57 0.5
316,880 + 14602 mRNA_6234 0.58 0.9
317,036 - 14602 mRNA_6234 0.66 -0.3
317,036 - 14602 mRNA_6234 0.66 0.3
317,601 + 1.2
317,770 - -2.6