Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6232

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6231: 14599 - KOG2358 NifU-like domain-containing proteins, at 307619 to 308722 14599 mRNA_6232: 14600 - K17450 ACO2 homoaconitase, at 308954 to 311929 14600 mRNA_6233: 14601 - K16945 CDC11 cell division control protein 11, at 312446 to 314280 14601

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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308,574 + 14599 mRNA_6231 0.87 -3.2
308,591 - 14599 mRNA_6231 0.88 -2.5
308,605 + 14599 mRNA_6231 0.89 -4.7
308,732 - -1.6
308,733 + -1.9
308,737 - 0.5
308,825 - -0.6
308,828 - 0.7
308,840 + -1.3
308,860 + 0.2
308,870 + -1.8
308,911 + 1.1
309,032 - -2.5
309,040 + 1.6
309,043 + -0.2
309,046 - 0.5
309,075 + -1.2
309,192 - -1.3
309,201 + 1.0
309,213 + -0.8
309,383 - 14600 mRNA_6232 0.14 -0.5
309,511 - 14600 mRNA_6232 0.19 -1.1
309,633 + 14600 mRNA_6232 0.23 1.1
310,086 - 14600 mRNA_6232 0.38 -1.4
310,141 - 14600 mRNA_6232 0.40 2.3
310,227 - 14600 mRNA_6232 0.43 -2.3
311,213 + 14600 mRNA_6232 0.76 -0.1
311,694 - -1.1
311,982 - 1.3
312,135 + 0.4
312,145 + -0.8
312,149 + 0.5
312,255 - -0.4
312,276 + 2.3
312,299 + 1.8
312,451 - -0.4
312,593 - -1.5
312,745 - 14601 mRNA_6233 0.16 -0.3
312,858 - 14601 mRNA_6233 0.22 -0.5