Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6230

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6229: 14597 - K01895 ACSS, acs acetyl-CoA synthetase, at 302429 to 305318 14597 mRNA_6230: 14598 - K10688 UBE2W, UBC16 ubiquitin-conjugating enzyme E2 W, at 306149 to 307289 14598 mRNA_6231: 14599 - KOG2358 NifU-like domain-containing proteins, at 307619 to 308722 14599

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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305,252 + -1.5
305,256 + -0.1
305,261 - 2.0
305,392 - 0.1
305,396 - -0.8
305,396 + -0.6
305,400 - 0.0
305,400 - 0.4
305,415 + -1.2
305,417 - -0.7
305,421 - 0.3
305,424 - -2.5
305,431 - -0.3
305,434 - -0.6
305,435 - -0.4
305,435 - 1.2
305,438 + 0.0
305,439 - -0.3
305,440 - -1.5
305,443 + -2.0
305,444 + -0.0
305,453 - 0.4
305,453 + 0.2
305,454 - 1.2
305,454 + -0.3
305,454 - 1.4
305,455 + 0.3
305,455 - -0.5
305,467 - -1.5
305,468 + 0.2
305,472 - -1.3
305,473 - -2.1
305,474 + -0.4
305,474 + -2.0
305,474 + -0.1
305,476 - -0.0
305,488 + 0.0
305,491 + 0.7
305,491 - -0.6
305,502 - 0.4
305,528 - -0.5
305,531 - 0.3
305,531 + -0.4
305,531 - -1.7
305,536 + 0.2
305,536 - -1.7
305,545 + 1.9
305,548 + -2.8
305,554 - -0.1
305,558 - -1.2
305,568 + 0.2
305,578 + -0.5
305,588 + 0.1
305,600 - -1.3
305,603 + 0.1
305,609 - 0.6
305,615 + 0.4
305,628 - 2.0
305,630 - 0.5
305,638 + 0.2
305,703 + 0.1
305,738 - 0.6
305,748 + -0.3
305,765 - 0.2
305,786 - -0.2
305,863 - -2.8
305,880 + -0.4
305,883 - 2.9
305,891 + -0.6
305,902 - -0.3
305,906 - 1.0
305,907 - 1.1
305,909 + -0.8
305,916 - 0.5
305,917 + 0.7
305,924 - 0.1
305,924 - -0.1
305,934 + -0.1
305,985 - 0.2
305,997 - -1.9
306,016 - 0.3
306,049 + 0.9
306,053 + -0.4
306,151 + 0.2
306,152 + -2.5
306,177 - -0.8
306,328 + 14598 mRNA_6230 0.16 0.9
306,873 - 14598 mRNA_6230 0.63 1.3
306,875 + 14598 mRNA_6230 0.64 -0.6
306,883 + 14598 mRNA_6230 0.64 0.8
306,884 + 14598 mRNA_6230 0.64 -1.1
307,019 - 14598 mRNA_6230 0.76 1.1
307,289 - -0.4
307,427 - 0.8
307,443 - -1.2
307,444 + -0.0
307,454 + -1.2
307,576 - -0.7
307,576 - -1.5
307,589 + -0.0
307,594 - -1.2
307,600 + -0.1
307,605 - -0.1