Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6180

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6179: 14547 - KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s), at 187281 to 188756 14547 mRNA_6180: 14548 - KOG0218 Mismatch repair MSH3, at 188869 to 192529 14548 mRNA_6181: 14549 - K13126 PABPC polyadenylate-binding protein, at 192986 to 195356 14549

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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188,291 + 14547 mRNA_6179 0.68 -0.8
188,455 + 14547 mRNA_6179 0.80 -0.2
189,007 + 1.1
189,126 + 0.7
189,406 - 14548 mRNA_6180 0.15 -0.5
189,478 - 14548 mRNA_6180 0.17 0.6
189,585 + 14548 mRNA_6180 0.20 -0.9
190,042 + 14548 mRNA_6180 0.32 -0.0
190,631 + 14548 mRNA_6180 0.48 0.5
190,787 + 14548 mRNA_6180 0.52 2.1
190,798 + 14548 mRNA_6180 0.53 -0.4
190,905 - 14548 mRNA_6180 0.56 0.2
191,116 - 14548 mRNA_6180 0.61 -0.4
191,492 - 14548 mRNA_6180 0.72 -2.5
191,634 - 14548 mRNA_6180 0.76 -0.1
191,676 - 14548 mRNA_6180 0.77 -0.1
191,696 + 14548 mRNA_6180 0.77 -0.6
192,222 + -1.7
192,240 + -2.6
192,371 - -0.6
192,516 - 0.2
192,683 + 0.4
192,705 + 0.6
192,706 - -0.2
192,707 + -0.4
193,068 - -1.3