Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6179

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6178: 14546 - K17623 HDHD1 pseudouridine 5'-phosphatase, at 185787 to 186902 14546 mRNA_6179: 14547 - KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s), at 187281 to 188756 14547 mRNA_6180: 14548 - KOG0218 Mismatch repair MSH3, at 188869 to 192529 14548

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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186,386 + 14546 mRNA_6178 0.54 0.9
186,519 + 14546 mRNA_6178 0.66 0.8
186,668 + 14546 mRNA_6178 0.79 1.4
186,780 - 14546 mRNA_6178 0.89 -0.8
186,982 - 0.3
186,997 - -0.7
187,217 + 0.5
187,250 - -2.4
187,254 - 0.2
187,265 - -1.0
187,268 + 0.4
187,320 + -1.3
187,714 - 14547 mRNA_6179 0.29 2.3
187,853 + 14547 mRNA_6179 0.39 -0.1
188,291 + 14547 mRNA_6179 0.68 -0.8
188,455 + 14547 mRNA_6179 0.80 -0.2
189,007 + 1.1
189,126 + 0.7
189,406 - 14548 mRNA_6180 0.15 -0.5
189,478 - 14548 mRNA_6180 0.17 0.6
189,585 + 14548 mRNA_6180 0.20 -0.9