Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6177

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6176: 14544 - K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12, at 182326 to 182954 14544 mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183334 to 184793 14545 mRNA_6178: 14546 - K17623 HDHD1 pseudouridine 5'-phosphatase, at 185787 to 186902 14546

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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182,958 - 0.8
182,973 + 0.0
183,109 - -0.9
183,124 - -0.9
183,126 + 0.5
183,255 - -0.2
183,258 - 1.2
183,267 + 0.1
183,269 - 0.6
183,270 - -0.6
183,280 - 1.5
183,397 - 0.4
183,410 + 0.1
183,421 - 3.1
183,551 - 14545 mRNA_6177 0.15 -0.1
183,560 + 14545 mRNA_6177 0.15 -0.4
183,572 - 14545 mRNA_6177 0.16 0.5
183,572 - 14545 mRNA_6177 0.16 -2.5
183,588 + 14545 mRNA_6177 0.17 -0.4
183,734 - 14545 mRNA_6177 0.27 0.1
183,877 + 14545 mRNA_6177 0.37 -0.1
184,020 + 14545 mRNA_6177 0.47 -0.4
184,034 - 14545 mRNA_6177 0.48 -0.8
184,035 + 14545 mRNA_6177 0.48 0.8
184,062 - 14545 mRNA_6177 0.50 -0.2
184,338 - 14545 mRNA_6177 0.69 -0.0
184,464 + 14545 mRNA_6177 0.77 -1.4
184,627 + 14545 mRNA_6177 0.89 -1.8
184,734 + -0.9
184,743 - -0.5
185,147 - 0.8
185,196 + -0.1
185,324 - 0.5
185,640 + -0.3