Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6174

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6173: 14541 - K00698 CHS1 chitin synthase, at 172279 to 176176 14541 mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176764 to 178095 14542 mRNA_6175: 14543 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 178357 to 180910 14543

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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175,805 + -1.1
175,870 + -0.9
175,941 + 0.8
175,958 - 0.1
176,086 + -0.2
176,107 + -1.2
176,243 + 1.0
176,244 - -2.1
176,249 + 2.8
176,253 - -0.8
176,267 + -0.5
176,448 + 0.5
176,541 - 0.7
176,545 - -1.6
176,553 - 0.6
176,560 + 0.3
176,561 + 0.1
176,563 + 0.4
176,641 - 0.6
176,642 + 0.6
176,645 - -2.6
176,768 - -0.9
176,780 + -1.7
176,932 - 14542 mRNA_6174 0.13 0.3
176,938 + 14542 mRNA_6174 0.13 -0.4
176,938 + 14542 mRNA_6174 0.13 -0.9
177,065 - 14542 mRNA_6174 0.23 0.5
177,249 + 14542 mRNA_6174 0.36 -0.0
177,264 + 14542 mRNA_6174 0.38 -0.7
177,712 + 14542 mRNA_6174 0.71 -0.1
178,108 - 1.7
178,194 + 0.2
178,223 + 0.6
178,250 + -1.7
178,526 + 0.5
178,918 + 14543 mRNA_6175 0.22 1.7