Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6173

Experiments: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6172: 14540 - K02685 PRI2 DNA primase large subunit, at 169850 to 171909 14540 mRNA_6173: 14541 - K00698 CHS1 chitin synthase, at 172279 to 176176 14541 mRNA_6174: 14542 - BLAST Glycoside hydrolase [Aureobasidium pullulans], at 176764 to 178095 14542

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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171,959 - 1.3
171,980 - -0.3
171,984 + 0.1
171,985 + -0.9
171,995 + 1.2
172,005 + 0.6
172,157 + -2.0
172,166 + 0.1
172,237 + -2.1
172,289 + -0.2
172,293 - -2.7
172,426 + 1.4
172,637 - -0.2
172,638 + -0.4
172,714 - 14541 mRNA_6173 0.11 -1.7
172,896 + 14541 mRNA_6173 0.16 0.8
172,910 + 14541 mRNA_6173 0.16 -1.0
172,995 - 14541 mRNA_6173 0.18 0.7
173,141 + 14541 mRNA_6173 0.22 0.4
173,402 - 14541 mRNA_6173 0.29 2.2
173,409 + 14541 mRNA_6173 0.29 -1.5
173,412 - 14541 mRNA_6173 0.29 -0.1
173,420 + 14541 mRNA_6173 0.29 1.4
173,501 - 14541 mRNA_6173 0.31 0.1
173,595 - 14541 mRNA_6173 0.34 0.5
173,595 - 14541 mRNA_6173 0.34 -0.6
173,611 + 14541 mRNA_6173 0.34 -0.1
173,797 - 14541 mRNA_6173 0.39 2.3
173,922 + 14541 mRNA_6173 0.42 0.2
174,285 - 14541 mRNA_6173 0.51 -2.7
174,463 - 14541 mRNA_6173 0.56 0.1
174,528 + 14541 mRNA_6173 0.58 0.3
174,766 - 14541 mRNA_6173 0.64 0.0
174,835 - 14541 mRNA_6173 0.66 -0.5
175,211 - 14541 mRNA_6173 0.75 -0.2
175,217 + 14541 mRNA_6173 0.75 -0.4
175,238 - 14541 mRNA_6173 0.76 0.8
175,312 - 14541 mRNA_6173 0.78 2.2
175,325 - 14541 mRNA_6173 0.78 -0.7
175,346 + 14541 mRNA_6173 0.79 0.5
175,364 - 14541 mRNA_6173 0.79 0.2
175,365 - 14541 mRNA_6173 0.79 -0.1
175,483 + 14541 mRNA_6173 0.82 -0.2
175,752 - 14541 mRNA_6173 0.89 -1.3
175,805 + -1.1
175,870 + -0.9
175,941 + 0.8
175,958 - 0.1
176,086 + -0.2
176,107 + -1.2
176,243 + 1.0
176,244 - -2.1
176,249 + 2.8
176,253 - -0.8
176,267 + -0.5
176,448 + 0.5
176,541 - 0.7
176,545 - -1.6
176,553 - 0.6
176,560 + 0.3
176,561 + 0.1
176,563 + 0.4
176,641 - 0.6
176,642 + 0.6
176,645 - -2.6
176,768 - -0.9
176,780 + -1.7
176,932 - 14542 mRNA_6174 0.13 0.3
176,938 + 14542 mRNA_6174 0.13 -0.4
176,938 + 14542 mRNA_6174 0.13 -0.9
177,065 - 14542 mRNA_6174 0.23 0.5